Tableau information
Concept source: d1b4fa_ amino acid (a.a.) range (TYR26)(SER79)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HHHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(TYR26) (GLY34) H1
(SER37) (MET44) H2
(MET46) (VAL52) H3
(LEU56) (SER79) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 103.6° H2
H3 110.7° -111.5° H3
H4 -60.4° -119.0° 129.4°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2wu2c_ : (ILE22) (VAL128) [view usage] : f.21.2.2 |Heme-binding four-helical bundle |Fumarate reductase respiratory complex transmembrane subunits |Succinate dehydrogenase/Fumarate reductase transmembrane subunits (SdhC/FrdC and SdhD/FrdD) |Succinate dehydrogenase subunit SdhC |Escherichia coli [TaxId: 562]
d2jrza_ : (LEU42) (ILE90) [view usage] : a.4.3.0 |DNA/RNA-binding 3-helical bundle |ARID-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3ntua1 : (PRO13) (ASP61) [view usage] : a.60.4.1 |SAM domain-like |Rad51 N-terminal domain-like |DNA repair protein Rad51, N-terminal domain |DNA repair protein Rad51, N-terminal domain |Methanococcus voltae [TaxId: 523842]
d2f1ha1 : (GLY12) (ASP61) [view usage] : a.60.4.0 |SAM domain-like |Rad51 N-terminal domain-like |automated matches |automated matches |Methanococcus voltae [TaxId: 2188]
d1yona1 : (ILE169) (THR238) [view usage] : a.100.1.7 |6-phosphogluconate dehydrogenase C-terminal domain-like |6-phosphogluconate dehydrogenase C-terminal domain-like |Ketopantoate reductase PanE |Ketopantoate reductase PanE |Escherichia coli [TaxId: 562]
d1j1va_ : (THR375) (PHE429) [view usage] : a.4.12.2 |DNA/RNA-binding 3-helical bundle |TrpR-like |Chromosomal replication initiation factor DnaA C-terminal domain IV |Chromosomal replication initiation factor DnaA C-terminal domain IV |Escherichia coli [TaxId: 562]
d2reqa1 : (SER486) (LEU552) [view usage] : c.1.19.1 |TIM beta/alpha-barrel |Cobalamin (vitamin B12)-dependent enzymes |Methylmalonyl-CoA mutase, N-terminal (CoA-binding) domain |Methylmalonyl-CoA mutase alpha subunit, domain 1 |Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]
d1lzwb_ : (ASN94) (THR157) [view usage] : a.174.1.1 |Double Clp-N motif |Double Clp-N motif |Double Clp-N motif |N-terminal, ClpS-binding domain of ClpA, an Hsp100 chaperone |Escherichia coli [TaxId: 562]
d3etla1 : (PRO13) (ASP61) [view usage] : a.60.4.0 |SAM domain-like |Rad51 N-terminal domain-like |automated matches |automated matches |Methanococcus maripaludis [TaxId: 39152]
d2doda1 : (PRO658) (ARG719) [view usage] : a.159.2.1 |Another 3-helical bundle |FF domain |FF domain |Transcription elongation regulator 1 |Human (Homo sapiens) [TaxId: 9606]
d2o3ea_ : (ASP467) (ARG544) [view usage] : d.92.1.5 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Neurolysin-like |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1uzca_ : (THR13) (GLU70) [view usage] : a.159.2.1 |Another 3-helical bundle |FF domain |FF domain |Hypa/FBP11 |Human (Homo sapiens) [TaxId: 9606]
d3jpza1 : (CYS19) (ASN54) [view usage] : a.83.1.0 |Guanido kinase N-terminal domain |Guanido kinase N-terminal domain |automated matches |automated matches |Innkeeper worm (Urechis caupo) [TaxId: 6431]
d2zmea1 : (ALA34) (MET90) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2i4ka_ : (ARG45) (GLU122) [view usage] : d.189.1.0 |PX domain |PX domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1wjba_ : (LEU2) (CYS40) [view usage] : a.4.10.1 |DNA/RNA-binding 3-helical bundle |N-terminal Zn binding domain of HIV integrase |N-terminal Zn binding domain of HIV integrase |N-terminal Zn binding domain of HIV integrase |Human immunodeficiency virus type 1 [TaxId: 11676]
d1vfga1 : (VAL144) (ALA187) [view usage] : a.173.1.1 |Poly A polymerase C-terminal region-like |Poly A polymerase C-terminal region-like |Poly A polymerase C-terminal region-like |Poly A polymerase PcnB |Aquifex aeolicus [TaxId: 63363]
d1j3xa_ : (SER15) (MET75) [view usage] : a.21.1.1 |HMG-box |HMG-box |HMG-box |High mobility group protein 2, HMG2 |Pig (Sus scrofa) [TaxId: 9823]
d2eaoa_ : (TYR37) (GLN84) [view usage] : a.60.1.0 |SAM domain-like |SAM/Pointed domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1qzwa2 : (GLU372) (MET430) [view usage] : a.36.1.1 |Signal peptide-binding domain |Signal peptide-binding domain |Signal peptide-binding domain |Signal sequence binding protein Ffh |Sulfolobus solfataricus [TaxId: 2287]
d4mhvb_ : (ASN128) (LYS168) [view usage] : a.60.1.0 |SAM domain-like |SAM/Pointed domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2cqna1 : (MET743) (GLN805) [view usage] : a.159.2.1 |Another 3-helical bundle |FF domain |FF domain |Hypa/FBP11 |Human (Homo sapiens) [TaxId: 9606]
d1kzma_ : (ASN13) (GLY113) [view usage] : a.93.1.1 |Heme-dependent peroxidases |Heme-dependent peroxidases |CCP-like |Plant peroxidase |Horseradish (Armoracia rusticana) [TaxId: 3704]
d1r6bx1 : (ASN3) (THR66) [view usage] : a.174.1.1 |Double Clp-N motif |Double Clp-N motif |Double Clp-N motif |N-terminal, ClpS-binding domain of ClpA, an Hsp100 chaperone |Escherichia coli [TaxId: 562]
d1yjqa1 : (ILE169) (THR238) [view usage] : a.100.1.7 |6-phosphogluconate dehydrogenase C-terminal domain-like |6-phosphogluconate dehydrogenase C-terminal domain-like |Ketopantoate reductase PanE |Ketopantoate reductase PanE |Escherichia coli [TaxId: 562]
d3gfkb_ : (SER259) (GLY307) [view usage] : a.60.3.1 |SAM domain-like |C-terminal domain of RNA polymerase alpha subunit |C-terminal domain of RNA polymerase alpha subunit |automated matches |Bacillus subtilis [TaxId: 1423]
d4m9ab1 : (THR6) (CYS80) [view usage] : e.6.1.0 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |automated matches |automated matches |Burkholderia thailandensis [TaxId: 271848]
d1s7ea1 : (ASP109) (PHE147) [view usage] : a.4.1.1 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |Homeodomain |Hepatocyte nuclear factor 6 |Mouse (Mus musculus) [TaxId: 10090]
d1xg7b_ : (ILE97) (ALA160) [view usage] : a.96.1.6 |DNA-glycosylase |DNA-glycosylase |AgoG-like |Hypothetical protein PF0904 |Pyrococcus furiosus [TaxId: 2261]
d2dvha_ : (GLY3) (LEU79) [view usage] : a.3.1.1 |Cytochrome c |Cytochrome c |monodomain cytochrome c |Cytochrome c6 (synonym: cytochrome c553) |Desulfovibrio desulfuricans [TaxId: 876]
d1ucva_ : (MET19) (LEU70) [view usage] : a.60.1.2 |SAM domain-like |SAM/Pointed domain |SAM (sterile alpha motif) domain |Ephrin type-A receptor 8, C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d1c3qa1 : (HIS187) (SER253) [view usage] : c.72.1.2 |Ribokinase-like |Ribokinase-like |Thiamin biosynthesis kinases |Hydroxyethylthiazole kinase (THZ kinase, ThiK) |Bacillus subtilis [TaxId: 1423]
d2wdqc_ : (ILE22) (VAL128) [view usage] : f.21.2.2 |Heme-binding four-helical bundle |Fumarate reductase respiratory complex transmembrane subunits |Succinate dehydrogenase/Fumarate reductase transmembrane subunits (SdhC/FrdC and SdhD/FrdD) |Succinate dehydrogenase subunit SdhC |Escherichia coli [TaxId: 562]
d1s9hb_ : (GLY224) (LYS278) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |Rep 40 protein helicase domain |Adeno-associated virus 2, AAV2 [TaxId: 10804]
d1nq4a_ : (THR5) (GLY38) [view usage] : a.28.1.1 |Acyl carrier protein-like |ACP-like |Acyl-carrier protein (ACP) |Oxytetracycline polyketide synthase acyl carrier |Streptomyces rimosus [TaxId: 1927]
d2eqza_ : (ALA22) (GLY86) [view usage] : a.21.1.1 |HMG-box |HMG-box |HMG-box |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4fl4j_ : (ASP24) (ARG81) [view usage] : a.139.1.0 |Type I dockerin domain |Type I dockerin domain |automated matches |automated matches |Clostridium thermocellum [TaxId: 1515]
d2jv3a_ : (ASP94) (LYS134) [view usage] : a.60.1.1 |SAM domain-like |SAM/Pointed domain |Pointed domain |Ets-1 transcription factor pointed domain |Mouse (Mus musculus) [TaxId: 10090]
d1xg7a_ : (LEU96) (ALA160) [view usage] : a.96.1.6 |DNA-glycosylase |DNA-glycosylase |AgoG-like |Hypothetical protein PF0904 |Pyrococcus furiosus [TaxId: 2261]
d1y88a1 : (ASP136) (GLY184) [view usage] : a.60.4.3 |SAM domain-like |Rad51 N-terminal domain-like |Hypothetical protein AF1548, C-terminal domain |Hypothetical protein AF1548, C-terminal domain |Archaeoglobus fulgidus [TaxId: 2234]
d1s9ha_ : (LEU227) (LYS278) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |Rep 40 protein helicase domain |Adeno-associated virus 2, AAV2 [TaxId: 10804]
d2gfnb2 : (PRO83) (ALA173) [view usage] : a.121.1.1 |Tetracyclin repressor-like, C-terminal domain |Tetracyclin repressor-like, C-terminal domain |Tetracyclin repressor-like, C-terminal domain |Probable transcriptional regulator RHA1_ro04631 |Rhodococcus sp. RHA1 [TaxId: 101510]
d1t4ga1 : (PRO13) (ASP61) [view usage] : a.60.4.1 |SAM domain-like |Rad51 N-terminal domain-like |DNA repair protein Rad51, N-terminal domain |DNA repair protein Rad51, N-terminal domain |Methanococcus voltae [TaxId: 2188]
d3hzsa_ : (THR212) (ASN268) [view usage] : d.2.1.0 |Lysozyme-like |Lysozyme-like |automated matches |automated matches |Staphylococcus aureus [TaxId: 196620]
d1ks9a1 : (ILE169) (THR238) [view usage] : a.100.1.7 |6-phosphogluconate dehydrogenase C-terminal domain-like |6-phosphogluconate dehydrogenase C-terminal domain-like |Ketopantoate reductase PanE |Ketopantoate reductase PanE |Escherichia coli [TaxId: 562]
d2b7ea1 : (GLU4) (ASN58) [view usage] : a.159.2.1 |Another 3-helical bundle |FF domain |FF domain |Pre-mRNA-processing protein PRP40 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2ffha2 : (ASP355) (LYS418) [view usage] : a.36.1.1 |Signal peptide-binding domain |Signal peptide-binding domain |Signal peptide-binding domain |Signal sequence binding protein Ffh |Thermus aquaticus [TaxId: 271]
d2haja_ : (MET451) (TRP522) [view usage] : a.236.1.1 |DNA primase DnaG, C-terminal domain |DNA primase DnaG, C-terminal domain |DNA primase DnaG, C-terminal domain |DNA primase DnaG, C-terminal domain |Escherichia coli [TaxId: 562]
d1u5ta1 : (THR23) (ARG81) [view usage] : a.4.5.54 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Vacuolar sorting protein domain |Vacuolar sorting protein SNF8 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2doea1 : (GLY792) (LYS849) [view usage] : a.159.2.1 |Another 3-helical bundle |FF domain |FF domain |Transcription elongation regulator 1 |Human (Homo sapiens) [TaxId: 9606]
d2z43b1 : (SER21) (ASP70) [view usage] : a.60.4.1 |SAM domain-like |Rad51 N-terminal domain-like |DNA repair protein Rad51, N-terminal domain |DNA repair protein Rad51, N-terminal domain |Sulfolobus solfataricus [TaxId: 273057]
d2wp9c_ : (ILE22) (VAL128) [view usage] : f.21.2.2 |Heme-binding four-helical bundle |Fumarate reductase respiratory complex transmembrane subunits |Succinate dehydrogenase/Fumarate reductase transmembrane subunits (SdhC/FrdC and SdhD/FrdD) |Succinate dehydrogenase subunit SdhC |Escherichia coli [TaxId: 562]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, d.92, a.93, c.72, c.37, e.6, d.2, a.96, f.21, a.100, a.4, a.3, a.83, a.60, a.28, a.21, a.174, a.159, a.121, d.189,
a.173, a.139, a.236, a.36