Tableau information
Concept source: d3hiqb_ amino acid (a.a.) range (SER122)(MET171)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HHHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(SER122) (GLY131) H1
(THR133) (GLY138) H2
(GLY140) (ASN152) H3
(LYS159) (MET171) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 61.1° H2
H3 66.1° 105.6° H3
H4 -140.8° -82.0° -143.1°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3b5kb_ : (VAL11) (GLY87) [view usage] : a.26.1.2 |4-helical cytokines |4-helical cytokines |Short-chain cytokines |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d3qt2d_ : (THR7) (GLU88) [view usage] : a.26.1.2 |4-helical cytokines |4-helical cytokines |Short-chain cytokines |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3qt2e_ : (THR7) (ARG90) [view usage] : a.26.1.2 |4-helical cytokines |4-helical cytokines |Short-chain cytokines |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1jfpa_ : (ASN199) (LEU262) [view usage] : f.13.1.2 |Family A G protein-coupled receptor-like |Family A G protein-coupled receptor-like |Rhodopsin-like |Rhodopsin |Cow (Bos taurus) [TaxId: 9913]
d3hisa_ : (PRO124) (PHE178) [view usage] : d.165.1.0 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |automated matches |automated matches |Common soapwort (Saponaria officinalis) [TaxId: 3572]
d3hc8a_ : (LYS810) (ALA857) [view usage] : a.211.1.2 |HD-domain/PDEase-like |HD-domain/PDEase-like |PDEase |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1apaa_ : (PRO129) (PHE184) [view usage] : d.165.1.1 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |Plant cytotoxins |Pokeweed antiviral protein alpha |Pokeweed (Phytolacca americana) [TaxId: 3527]
d1sfxb_ : (PRO4) (GLY61) [view usage] : a.4.5.50 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |TrmB-like |Hypothetical protein AF2008 |Archaeoglobus fulgidus [TaxId: 2234]
d1t56a2 : (ASP98) (GLY160) [view usage] : a.121.1.1 |Tetracyclin repressor-like, C-terminal domain |Tetracyclin repressor-like, C-terminal domain |Tetracyclin repressor-like, C-terminal domain |Ethr repressor |Mycobacterium tuberculosis [TaxId: 1773]
d3va2a_ : (THR26) (ARG109) [view usage] : a.26.1.2 |4-helical cytokines |4-helical cytokines |Short-chain cytokines |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2ch7a1 : (LYS225) (ARG527) [view usage] : h.4.5.1 |Antiparallel coiled-coil |Methyl-accepting chemotaxis protein (MCP) signaling domain |Methyl-accepting chemotaxis protein (MCP) signaling domain |Methyl-accepting chemotaxis protein 2, MCP2 |Thermotoga maritima [TaxId: 2336]
d3va2b_ : (ALA28) (CYS105) [view usage] : a.26.1.2 |4-helical cytokines |4-helical cytokines |Short-chain cytokines |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1oqla_ : (PRO116) (PHE169) [view usage] : d.165.1.1 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |Plant cytotoxins |Mistletoe lectin I A-chain |European mistletoe (Viscum album) [TaxId: 3972]
d3q0va2 : (ASP98) (GLY160) [view usage] : a.121.1.1 |Tetracyclin repressor-like, C-terminal domain |Tetracyclin repressor-like, C-terminal domain |Tetracyclin repressor-like, C-terminal domain |Ethr repressor |Mycobacterium tuberculosis [TaxId: 1773]
d3ceia1 : (MET14) (LEU80) [view usage] : a.2.11.0 |Long alpha-hairpin |Fe,Mn superoxide dismutase (SOD), N-terminal domain |automated matches |automated matches |Helicobacter pylori [TaxId: 210]
d3afha2 : (GLU391) (VAL452) [view usage] : a.97.1.0 |An anticodon-binding domain of class I aminoacyl-tRNA synthetases |An anticodon-binding domain of class I aminoacyl-tRNA synthetases |automated matches |automated matches |Thermotoga maritima [TaxId: 2336]
d3hhhb_ : (LYS2) (VAL42) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Enterococcus faecalis [TaxId: 1351]
d3tp3a2 : (ASP98) (GLY160) [view usage] : a.121.1.1 |Tetracyclin repressor-like, C-terminal domain |Tetracyclin repressor-like, C-terminal domain |Tetracyclin repressor-like, C-terminal domain |Ethr repressor |Mycobacterium tuberculosis [TaxId: 1773]
d3tena_ : (CYS91) (GLY143) [view usage] : c.53.2.0 |Resolvase-like |beta-carbonic anhydrase, cab |automated matches |automated matches |Acidianus sp. [TaxId: 1071056]
d3izbo_ : (GLU31) (ASN78) [view usage] : i.1.1.3 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Small subunit |Eukaryotic, cytoplasmic (40S subunit) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1qssa2 : (VAL453) (THR544) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |DNA polymerase I (Klenow fragment) |Thermus aquaticus [TaxId: 271]
d3di1a_ : (ILE230) (ALA291) [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Staphylococcus aureus [TaxId: 93062]
d3qkvb_ : (GLN35) (PHE97) [view usage] : c.117.1.1 |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1yx7a_ : (VAL5) (CYS80) [view usage] : a.39.1.0 |EF Hand-like |EF-hand |automated matches |automated matches |Haemopis marmorata [TaxId: 38567]
d1hula_ : (PRO6) (GLU88) [view usage] : a.26.1.2 |4-helical cytokines |4-helical cytokines |Short-chain cytokines |Interleukin-5 |Human (Homo sapiens) [TaxId: 9606]
d1rl0a_ : (GLN122) (PHE181) [view usage] : d.165.1.1 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |Plant cytotoxins |Dianthin 30 |Clove pink (Dianthus caryophyllus) [TaxId: 3570]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, c.1, i.1, c.117, d.165, a.211, c.53, a.4, f.13, a.39, a.26, h.4, a.2, a.121, a.97