Tableau information
Concept source: d2a9ia_ amino acid (a.a.) range (ASN49)(LEU100)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HHHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASN49) (GLY63) H1
(SER65) (ASN78) H2
(VAL81) (GLU92) H3
(PHE94) (LEU100) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 134.6° H2
H3 -90.6° 132.3° H3
H4 81.3° -53.9° -153.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4btjb_ : (ASP268) (GLY325) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1orpa_ : (LEU70) (GLY132) [view usage] : a.96.1.1 |DNA-glycosylase |DNA-glycosylase |Endonuclease III |Endonuclease III |Escherichia coli [TaxId: 562]
d1dgna_ : (SER36) (SER85) [view usage] : a.77.1.3 |DEATH domain |DEATH domain |Caspase recruitment domain, CARD |Iceberg |Human (Homo sapiens) [TaxId: 9606]
d2zd2a1 : (ASP1065) (ARG1132) [view usage] : d.381.1.1 |ATP12-like |ATP12-like |ATP12-like |ATP12 ATPase |Paracoccus denitrificans [TaxId: 266]
d2gf5a2 : (LYS33) (GLU83) [view usage] : a.77.1.4 |DEATH domain |DEATH domain |DEATH effector domain, DED |FADD (Mort1) |Human (Homo sapiens) [TaxId: 9606]
d1v63a_ : (GLY27) (LYS93) [view usage] : a.21.1.1 |HMG-box |HMG-box |HMG-box |Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) |Mouse (Mus musculus) [TaxId: 10090]
d1rhza_ : (GLU102) (CYS228) [view usage] : f.41.1.1 |Preprotein translocase SecY subunit |Preprotein translocase SecY subunit |Preprotein translocase SecY subunit |Preprotein translocase SecY subunit |Methanococcus jannaschii [TaxId: 2190]
d4im7a2 : (LEU424) (LYS487) [view usage] : a.100.1.0 |6-phosphogluconate dehydrogenase C-terminal domain-like |6-phosphogluconate dehydrogenase C-terminal domain-like |automated matches |automated matches |Escherichia coli [TaxId: 199310]
d1d2zd_ : (ALA90) (ASN154) [view usage] : a.77.1.2 |DEATH domain |DEATH domain |DEATH domain, DD |Tube death domain |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1keaa_ : (SER76) (GLY137) [view usage] : a.96.1.2 |DNA-glycosylase |DNA-glycosylase |Mismatch glycosylase |Thymine-DNA glycosylase |Methanobacterium thermoformicicum [TaxId: 145262]
d3j38y_ : (LEU80) (GLY129) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Drosophila melanogaster [TaxId: 7227]
d1nh1a_ : (GLU38) (SER115) [view usage] : e.45.1.1 |Antivirulence factor |Antivirulence factor |Antivirulence factor |Type III effector AvrB |Pseudomonas syringae [TaxId: 317]
d4nfma_ : (ASP244) (ARG300) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2r31a_ : (ASP65) (ARG132) [view usage] : d.381.1.1 |ATP12-like |ATP12-like |ATP12-like |ATP12 ATPase |Paracoccus denitrificans [TaxId: 266]
d1miva1 : (ASN183) (LEU236) [view usage] : a.173.1.1 |Poly A polymerase C-terminal region-like |Poly A polymerase C-terminal region-like |Poly A polymerase C-terminal region-like |tRNA CCA-adding enzyme, C-terminal domains |Bacillus stearothermophilus [TaxId: 1422]
d1qwva_ : (LEU55) (LEU125) [view usage] : a.39.2.1 |EF Hand-like |Insect pheromone/odorant-binding proteins |Insect pheromone/odorant-binding proteins |Moth pheromone-binding protein, PBP |Polyphemus moth (Antheraea polyphemus) [TaxId: 7120]
d1a1wa_ : (LYS33) (GLU83) [view usage] : a.77.1.4 |DEATH domain |DEATH domain |DEATH effector domain, DED |FADD (Mort1) |Human (Homo sapiens) [TaxId: 9606]
d2p4xa1 : (ASP65) (ARG132) [view usage] : d.381.1.1 |ATP12-like |ATP12-like |ATP12-like |ATP12 ATPase |Paracoccus denitrificans [TaxId: 266]
d4btja_ : (ASP268) (GLY325) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2fug12 : (THR28) (SER77) [view usage] : c.142.1.1 |Nqo1 FMN-binding domain-like |Nqo1 FMN-binding domain-like |Nqo1 FMN-binding domain-like |NADH-quinone oxidoreductase chain 1, Nqo1 |Thermus thermophilus [TaxId: 274]
d1n1jb_ : (LEU45) (PRO119) [view usage] : a.22.1.3 |Histone-fold |Histone-fold |TBP-associated factors, TAFs |Nuclear transcription factor Y subunit gamma (Nf-Yc2) |Human (Homo sapiens) [TaxId: 9606]
d1d2zb_ : (THR89) (ASN154) [view usage] : a.77.1.2 |DEATH domain |DEATH domain |DEATH domain, DD |Tube death domain |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d2qvja_ : (LEU278) (ALA316) [view usage] : a.260.1.1 |Rhabdovirus nucleoprotein-like |Rhabdovirus nucleoprotein-like |Rhabdovirus nucleocapsid protein |Nucleoprotein |Vesicular stomatitis indiana virus [TaxId: 11277]
d1mi7r_ : (SER5) (LEU105) [view usage] : a.4.12.1 |DNA/RNA-binding 3-helical bundle |TrpR-like |Trp repressor, TrpR |Trp repressor, TrpR |Escherichia coli [TaxId: 562]
d2duya1 : (SER25) (LEU69) [view usage] : a.60.2.7 |SAM domain-like |RuvA domain 2-like |ComEA-like |Uncharacterized protein TTHA1967 |Thermus thermophilus [TaxId: 274]
d2p1ma2 : (LEU101) (GLU160) [view usage] : a.157.1.0 |Skp1 dimerisation domain-like |Skp1 dimerisation domain-like |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d2juwb_ : (SER8) (HIS80) [view usage] : a.284.1.1 |YejL-like |YejL-like |YejL-like |Uncharacterized protein SO2176 |Shewanella oneidensis [TaxId: 70863]
d1a1za_ : (GLY32) (PHE82) [view usage] : a.77.1.4 |DEATH domain |DEATH domain |DEATH effector domain, DED |FADD (Mort1) |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
i.1, d.144, a.96, a.100, a.4, a.39, a.77, a.60, c.142, a.21, a.157, a.22, f.41, a.260, a.173, a.284, d.381, e.45