Tableau information
Concept source: d4arxa1 amino acid (a.a.) range (SER71)(SER176)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HHHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(SER71) (ILE84) H1
(GLU90) (ASP120) H2
(PRO124) (VAL150) H3
(LEU158) (SER176) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 134.9° H2
H3 -25.7° -160.2° H3
H4 132.3° 25.7° -152.9°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1kuqa_ : (GLU5) (LEU84) [view usage] : a.16.1.2 |S15/NS1 RNA-binding domain |S15/NS1 RNA-binding domain |Ribosomal protein S15 |Ribosomal protein S15 |Thermus thermophilus [TaxId: 274]
d2gnoa1 : (GLU228) (ARG306) [view usage] : a.80.1.1 |post-AAA+ oligomerization domain-like |post-AAA+ oligomerization domain-like |DNA polymerase III clamp loader subunits, C-terminal domain |gamma subunit |Thermotoga maritima [TaxId: 2336]
d1k2ha_ : (SER2) (CYS85) [view usage] : a.39.1.2 |EF Hand-like |EF-hand |S100 proteins |Calcyclin (S100) |Norway rat (Rattus norvegicus), s100a1 [TaxId: 10116]
d1vljb_ : (ASP177) (GLY254) [view usage] : e.22.1.2 |Dehydroquinate synthase-like |Dehydroquinate synthase-like |Iron-containing alcohol dehydrogenase |NADH-dependent butanol dehydrogenase A (TM0820) |Thermotoga maritima [TaxId: 2336]
d2vk9a1 : (ARG5) (LEU70) [view usage] : c.68.1.22 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |Glycosylating toxin catalytic domain-like |Alpha-toxin |Clostridium novyi [TaxId: 1542]
d1a6qa2 : (GLN66) (HIS120) [view usage] : d.219.1.1 |PP2C-like |PP2C-like |PP2C-like |Protein serine/threonine phosphatase 2C, catalytic domain |Human (Homo sapiens) [TaxId: 9606]
d1o2db_ : (PRO172) (THR250) [view usage] : e.22.1.2 |Dehydroquinate synthase-like |Dehydroquinate synthase-like |Iron-containing alcohol dehydrogenase |Alcohol dehydrogenase TM0920 |Thermotoga maritima [TaxId: 2336]
d1jdea3 : (ASP113) (MET191) [view usage] : d.142.1.5 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |Pyruvate phosphate dikinase, N-terminal domain |Pyruvate phosphate dikinase, N-terminal domain |Clostridium symbiosum [TaxId: 1512]
d1yura1 : (THR7) (GLU86) [view usage] : a.39.1.2 |EF Hand-like |EF-hand |S100 proteins |Calcyclin (S100) |Human (Homo sapiens), s100a13 [TaxId: 9606]
d2vkdb_ : (LYS6) (LEU91) [view usage] : c.68.1.22 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |Glycosylating toxin catalytic domain-like |automated matches |Clostridium sordellii [TaxId: 1505]
d1vs5o1 : (SER3) (LEU84) [view usage] : a.16.1.2 |S15/NS1 RNA-binding domain |S15/NS1 RNA-binding domain |Ribosomal protein S15 |Ribosomal protein S15 |Escherichia coli [TaxId: 562]
d1w99a1 : (TRP89) (LEU175) [view usage] : f.1.3.1 |Toxins' membrane translocation domains |delta-Endotoxin (insectocide), N-terminal domain |delta-Endotoxin (insectocide), N-terminal domain |delta-Endotoxin (insectocide), N-terminal domain |Bacillus thuringiensis, Cry4Ba [TaxId: 1428]
d2bvla1 : (ARG6) (ASN88) [view usage] : c.68.1.22 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |Glycosylating toxin catalytic domain-like |Toxin B |Clostridium difficile [TaxId: 1496]
d1o2da_ : (PRO172) (ALA248) [view usage] : e.22.1.2 |Dehydroquinate synthase-like |Dehydroquinate synthase-like |Iron-containing alcohol dehydrogenase |Alcohol dehydrogenase TM0920 |Thermotoga maritima [TaxId: 2336]
d2irvb_ : (GLY172) (ASP268) [view usage] : f.51.1.1 |Rhomboid-like |Rhomboid-like |Rhomboid-like |GlpG |Escherichia coli [TaxId: 562]
d3srza_ : (SER5) (ASN87) [view usage] : c.68.1.0 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |automated matches |automated matches |Clostridium difficile [TaxId: 272563]
d1vlja_ : (ASP177) (GLY254) [view usage] : e.22.1.2 |Dehydroquinate synthase-like |Dehydroquinate synthase-like |Iron-containing alcohol dehydrogenase |NADH-dependent butanol dehydrogenase A (TM0820) |Thermotoga maritima [TaxId: 2336]
d2gtqa4 : (ILE812) (LEU866) [view usage] : a.118.1.27 |alpha-alpha superhelix |ARM repeat |Aminopeptidase N (APN) C-terminal-like |Aminopeptidase N (APN) C-terminal domain |Neisseria meningitidis [TaxId: 122586]
d4pu2a4 : (ILE812) (ILE865) [view usage] : a.118.1.27 |alpha-alpha superhelix |ARM repeat |Aminopeptidase N (APN) C-terminal-like |Aminopeptidase N (APN) C-terminal domain |Neisseria meningitidis [TaxId: 122586]
d2gf5a1 : (ALA91) (LYS153) [view usage] : a.77.1.2 |DEATH domain |DEATH domain |DEATH domain, DD |FADD (Mort1) |Human (Homo sapiens) [TaxId: 9606]
d1bqmb_ : (PRO247) (LYS311) [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |HIV-1 reverse transcriptase |Human immunodeficiency virus type 1 [TaxId: 11676]
d1zbob_ : (ARG126) (LEU196) [view usage] : b.122.1.10 |PUA domain-like |PUA domain-like |LON domain-like |automated matches |Bordetella parapertussis [TaxId: 257311]
d2ebfx1 : (PRO593) (LEU668) [view usage] : a.296.1.1 |PMT central region-like |PMT central region-like |PMT central region-like |Dermonecrotic toxin, ToxA |Pasteurella multocida [TaxId: 747]
d3jwrb_ : (ASP806) (GLU858) [view usage] : a.211.1.2 |HD-domain/PDEase-like |HD-domain/PDEase-like |PDEase |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1dika3 : (ASN112) (MET191) [view usage] : d.142.1.5 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |Pyruvate phosphate dikinase, N-terminal domain |Pyruvate phosphate dikinase, N-terminal domain |Clostridium symbiosum [TaxId: 1512]
d1usyc_ : (HIS131) (TYR185) [view usage] : d.104.1.1 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain |ATP phosphoribosyltransferase regulatory subunit HisZ |Thermotoga maritima [TaxId: 2336]
d1n3ka_ : (MET1) (HIS52) [view usage] : a.77.1.4 |DEATH domain |DEATH domain |DEATH effector domain, DED |PEA-15 (phosphoprotein enriched in astrocytes 15 kDa) |Chinese hamster (Cricetulus griseus) [TaxId: 10029]
d1ji6a3 : (PRO106) (LEU209) [view usage] : f.1.3.1 |Toxins' membrane translocation domains |delta-Endotoxin (insectocide), N-terminal domain |delta-Endotoxin (insectocide), N-terminal domain |delta-Endotoxin (insectocide), N-terminal domain |Bacillus thuringiensis, CRY3bb1 [TaxId: 1428]
d1cfaa_ : (ILE6) (ILE65) [view usage] : a.50.1.1 |Anaphylotoxins (complement system) |Anaphylotoxins (complement system) |Anaphylotoxins (complement system) |C5a anaphylotoxin |Human (Homo sapiens) [TaxId: 9606]
d2vkda1 : (ASN5) (LEU91) [view usage] : c.68.1.22 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |Glycosylating toxin catalytic domain-like |Cytotoxin L |Clostridium sordellii [TaxId: 1505]
d1orja_ : (TYR1040) (HIS1127) [view usage] : a.24.19.1 |Four-helical up-and-down bundle |Flagellar export chaperone FliS |Flagellar export chaperone FliS |Flagellar export chaperone FliS |Aquifex aeolicus [TaxId: 63363]
d1usya_ : (HIS131) (TYR185) [view usage] : d.104.1.1 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain |ATP phosphoribosyltransferase regulatory subunit HisZ |Thermotoga maritima [TaxId: 2336]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, a.118, c.68, a.211, e.22, d.104, b.122, d.142, a.39, d.219, f.1, f.51, a.77, a.24, a.80, a.16, a.296, a.50