Tableau information
Concept source: d1jf4a_ amino acid (a.a.) range (GLU76)(GLN146)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HHHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLU76) (TYR93) H1
(LYS99) (ILE118) H2
(ILE118) (ASN123) H3
(ASN123) (GLN146) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 116.6° H2
H3 -124.3° -113.4° H3
H4 -57.3° 146.9° 91.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2iw5a1 : (GLY173) (ASN224) [view usage] : a.4.1.18 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |SWIRM domain |Lysine-specific histone demethylase 1, LSD1 |Human (Homo sapiens) [TaxId: 9606]
d2huca_ : (ILE152) (GLY243) [view usage] : a.124.1.1 |Phospholipase C/P1 nuclease |Phospholipase C/P1 nuclease |Phospholipase C |Bacterial phosholipase C |Bacillus cereus [TaxId: 1396]
d2bh7a1 : (ASP181) (LYS257) [view usage] : a.20.1.1 |PGBD-like |PGBD-like |Peptidoglycan binding domain, PGBD |Probable N-acetylmuramoyl-L-alanine amidase YbjR, C-terminal domain |Escherichia coli [TaxId: 562]
d1wtea_ : (ASN2) (THR70) [view usage] : c.52.1.29 |Restriction endonuclease-like |Restriction endonuclease-like |Restriction endonuclease EcoO109IR |Restriction endonuclease EcoO109IR |Escherichia coli [TaxId: 562]
d1xata_ : (SER166) (ALA210) [view usage] : b.81.1.3 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |Galactoside acetyltransferase-like |Xenobiotic acetyltransferase |Pseudomonas aeruginosa [TaxId: 287]
d1ufpa_ : (HIS82) (GLY150) [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Myoglobin |Sperm whale (Physeter catodon) [TaxId: 9755]
d3ag6a_ : (ALA95) (ILE139) [view usage] : c.26.1.0 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |automated matches |automated matches |Staphylococcus aureus [TaxId: 93061]
d1orda2 : (PRO108) (ASP157) [view usage] : c.67.1.5 |PLP-dependent transferase-like |PLP-dependent transferases |Ornithine decarboxylase major domain |Ornithine decarboxylase major domain |Lactobacillus sp., strain 30a [TaxId: 1591]
d4mcaa_ : (MET290) (HIS366) [view usage] : e.22.1.0 |Dehydroquinate synthase-like |Dehydroquinate synthase-like |automated matches |automated matches |Serratia plymuthica [TaxId: 1206776]
d1gsza2 : (VAL128) (LEU177) [view usage] : a.102.4.2 |alpha/alpha toroid |Terpenoid cyclases/Protein prenyltransferases |Terpene synthases |Squalene-hopene cyclase |Alicyclobacillus acidocaldarius [TaxId: 405212]
d1hm7b_ : (SER16) (PRO59) [view usage] : a.128.1.4 |Terpenoid synthases |Terpenoid synthases |Aristolochene/pentalenene synthase |Pentalenene synthase |Streptomyces sp., UC5319 [TaxId: 1931]
d4rjza_ : (ALA94) (THR129) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Agrobacterium fabrum [TaxId: 176299]
d2uxna1 : (GLY173) (ASN224) [view usage] : a.4.1.18 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |SWIRM domain |Lysine-specific histone demethylase 1, LSD1 |Human (Homo sapiens) [TaxId: 9606]
d3uorb_ : (GLY88) (THR126) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Xanthomonas axonopodis [TaxId: 190486]
d1dwra_ : (HIS82) (LEU149) [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Myoglobin |Horse (Equus caballus) [TaxId: 9796]
d1kfra_ : (ASP84) (ALA145) [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Trematode hemoglobin/myoglobin |Paramphistomum epiclitum [TaxId: 54403]
d3wyoa_ : (LYS87) (GLY150) [view usage] : a.1.1.2 |Globin-like |Globin-like |Globins |Myoglobin |Horse (Equus caballus) [TaxId: 9796]
d2x3fa_ : (ALA95) (ILE139) [view usage] : c.26.1.0 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |automated matches |automated matches |Staphylococcus aureus [TaxId: 282458]
d1kq3a_ : (ARG288) (ASN362) [view usage] : e.22.1.2 |Dehydroquinate synthase-like |Dehydroquinate synthase-like |Iron-containing alcohol dehydrogenase |Glycerol dehydrogenase |Thermotoga maritima [TaxId: 2336]
d2dw4a1 : (SER172) (ASN224) [view usage] : a.4.1.18 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |SWIRM domain |Lysine-specific histone demethylase 1, LSD1 |Human (Homo sapiens) [TaxId: 9606]
d2kwla_ : (MET5) (GLY84) [view usage] : a.28.1.0 |Acyl carrier protein-like |ACP-like |automated matches |automated matches |Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
d1h1oa2 : (GLY99) (LEU183) [view usage] : a.3.1.4 |Cytochrome c |Cytochrome c |Two-domain cytochrome c |Cytochrome c4 |Thiobacillus ferrooxidans [TaxId: 920]
d2jjra_ : (ASN110) (TYR164) [view usage] : d.165.1.1 |Ribosome inactivating proteins (RIP) |Ribosome inactivating proteins (RIP) |Plant cytotoxins |alpha-Trichosanthin |Mongolian snake gourd (Trichosanthes kirilowii Maxim.) [TaxId: 3677]
d1urga_ : (TRP159) (HIS227) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |D-maltodextrin-binding protein, MBP |Alicyclobacillus acidocaldarius [TaxId: 405212]
d2wkxa1 : (ASP181) (LYS257) [view usage] : a.20.1.1 |PGBD-like |PGBD-like |Peptidoglycan binding domain, PGBD |Probable N-acetylmuramoyl-L-alanine amidase YbjR, C-terminal domain |Escherichia coli [TaxId: 562]
d1la0a_ : (THR93) (LYS158) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Troponin C |Chicken (Gallus gallus) [TaxId: 9031]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.67, b.81, c.94, c.26, a.128, a.102, d.165, e.22, c.52, a.1, a.4, a.39, a.3, a.124, a.28, a.20