Tableau information
Concept source: d2bvja_ amino acid (a.a.) range (LEU213)(GLY288)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HHHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(LEU213) (ASP224) H1
(THR229) (PRO263) H2
(PRO263) (ASP272) H3
(LEU276) (GLY288) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 154.2° H2
H3 91.2° -100.8° H3
H4 -64.0° 104.8° -154.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2p6ra2 : (ASP489) (GLU573) [view usage] : a.289.1.2 |Sec63 N-terminal domain-like |Sec63 N-terminal domain-like |Achaeal helicase C-terminal domain |Hel308 helicase |Archaeoglobus fulgidus [TaxId: 2234]
d1ynya2 : (ASP344) (THR384) [view usage] : c.1.9.6 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Hydantoinase (dihydropyrimidinase), catalytic domain |D-hydantoinase |Bacillus sp. AR9 [TaxId: 301298]
d1l0lh_ : (ASP2) (ARG65) [view usage] : f.28.1.1 |Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |Cow (Bos taurus) [TaxId: 9913]
d1vh6a_ : (GLU22) (ILE119) [view usage] : a.24.19.1 |Four-helical up-and-down bundle |Flagellar export chaperone FliS |Flagellar export chaperone FliS |Flagellar export chaperone FliS |Bacillus subtilis [TaxId: 1423]
d2xlma_ : (GLY60) (ARG124) [view usage] : a.24.3.2 |Four-helical up-and-down bundle |Cytochromes |Cytochrome c'-like |automated matches |Achromobacter xylosoxidans [TaxId: 85698]
d1ynjd1 : (PRO957) (LEU1038) [view usage] : e.29.1.2 |beta and beta-prime subunits of DNA dependent RNA-polymerase |beta and beta-prime subunits of DNA dependent RNA-polymerase |RNA-polymerase beta-prime |RNA-polymerase beta-prime |Thermus aquaticus [TaxId: 271]
d2pinb_ : (PRO247) (TYR321) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Thyroid hormone receptor beta (TR-beta) |Human (Homo sapiens) [TaxId: 9606]
d3ilwa_ : (PRO171) (VAL223) [view usage] : e.11.1.0 |Type II DNA topoisomerase C-terminal domain-like |Type II DNA topoisomerase C-terminal domain-like |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d1wq1g_ : (PRO868) (LEU943) [view usage] : a.116.1.2 |GTPase activation domain, GAP |GTPase activation domain, GAP |p120GAP domain-like |p120GAP domain |Human (Homo sapiens) [TaxId: 9606]
d3snga_ : (VAL113) (ASP185) [view usage] : a.124.1.0 |Phospholipase C/P1 nuclease |Phospholipase C/P1 nuclease |automated matches |automated matches |Solanum lycopersicum [TaxId: 4081]
d2ebhx3 : (THR1121) (GLY1180) [view usage] : d.3.1.17 |Cysteine proteinases |Cysteine proteinases |PMT C-terminal domain like |Dermonecrotic toxin, ToxA |Pasteurella multocida [TaxId: 747]
d1pq6b_ : (ASP245) (ARG319) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Oxysterols receptor LXR-beta |Human (Homo sapiens) [TaxId: 9606]
d3vrcb_ : (GLY59) (TYR128) [view usage] : a.24.3.2 |Four-helical up-and-down bundle |Cytochromes |Cytochrome c'-like |automated matches |Thermochromatium tepidum [TaxId: 1050]
d1p59a_ : (VAL158) (LYS214) [view usage] : a.96.1.1 |DNA-glycosylase |DNA-glycosylase |Endonuclease III |Endonuclease III |Escherichia coli [TaxId: 562]
d1srpa2 : (GLN158) (TYR246) [view usage] : d.92.1.6 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Serralysin-like metalloprotease, catalytic (N-terminal) domain |Metalloprotease |Serratia marcescens [TaxId: 615]
d1cgna_ : (GLY60) (TYR123) [view usage] : a.24.3.2 |Four-helical up-and-down bundle |Cytochromes |Cytochrome c'-like |Cytochrome c' |Alcaligenes denitrificans [TaxId: 32002]
d1orna_ : (SER157) (LYS214) [view usage] : a.96.1.1 |DNA-glycosylase |DNA-glycosylase |Endonuclease III |Endonuclease III |Escherichia coli [TaxId: 562]
d1wera_ : (PRO868) (LEU943) [view usage] : a.116.1.2 |GTPase activation domain, GAP |GTPase activation domain, GAP |p120GAP domain-like |p120GAP domain |Human (Homo sapiens) [TaxId: 9606]
d1vh6b_ : (GLU22) (GLU122) [view usage] : a.24.19.1 |Four-helical up-and-down bundle |Flagellar export chaperone FliS |Flagellar export chaperone FliS |Flagellar export chaperone FliS |Bacillus subtilis [TaxId: 1423]
d1vb3a1 : (SER39) (ALA79) [view usage] : c.79.1.1 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Threonine synthase |Escherichia coli [TaxId: 562]
d1y67a1 : (ALA11) (GLN59) [view usage] : a.2.11.1 |Long alpha-hairpin |Fe,Mn superoxide dismutase (SOD), N-terminal domain |Fe,Mn superoxide dismutase (SOD), N-terminal domain |Mn superoxide dismutase (MnSOD) |Deinococcus radiodurans [TaxId: 1299]
d2okcb_ : (THR7) (LEU89) [view usage] : c.66.1.45 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |N-6 DNA Methylase-like |Type I restriction enzyme StySJI M protein |Bacteroides thetaiotaomicron [TaxId: 818]
d2xlva_ : (GLY60) (ALA122) [view usage] : a.24.3.2 |Four-helical up-and-down bundle |Cytochromes |Cytochrome c'-like |automated matches |Achromobacter xylosoxidans [TaxId: 85698]
d3vrca_ : (GLY59) (TYR128) [view usage] : a.24.3.2 |Four-helical up-and-down bundle |Cytochromes |Cytochrome c'-like |automated matches |Thermochromatium tepidum [TaxId: 1050]
d3ptfb_ : (ARG90) (LYS144) [view usage] : d.20.1.1 |UBC-like |UBC-like |UBC-related |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2ccya_ : (ALA59) (LYS126) [view usage] : a.24.3.2 |Four-helical up-and-down bundle |Cytochromes |Cytochrome c'-like |Cytochrome c' |Rhodospirillum molischianum [TaxId: 1083]
d1bbha_ : (GLY59) (ARG129) [view usage] : a.24.3.2 |Four-helical up-and-down bundle |Cytochromes |Cytochrome c'-like |Cytochrome c' |Chromatium vinosum [TaxId: 1049]
d2yuaa_ : (HIS46) (ARG90) [view usage] : a.2.3.0 |Long alpha-hairpin |Chaperone J-domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2ec5a3 : (THR1121) (GLY1180) [view usage] : d.3.1.17 |Cysteine proteinases |Cysteine proteinases |PMT C-terminal domain like |Dermonecrotic toxin, ToxA |Pasteurella multocida [TaxId: 747]
d2h8va_ : (ASP68) (SER111) [view usage] : a.39.2.1 |EF Hand-like |Insect pheromone/odorant-binding proteins |Insect pheromone/odorant-binding proteins |Pheromone-binding protein asp1 |Honeybee (Apis mellifera) [TaxId: 7460]
d2p50a2 : (MET313) (GLY350) [view usage] : c.1.9.10 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain |N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain |Escherichia coli [TaxId: 562]
d3dxjd_ : (PRO957) (LEU1038) [view usage] : e.29.1.2 |beta and beta-prime subunits of DNA dependent RNA-polymerase |beta and beta-prime subunits of DNA dependent RNA-polymerase |RNA-polymerase beta-prime |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d2xl8a_ : (GLY60) (TYR123) [view usage] : a.24.3.2 |Four-helical up-and-down bundle |Cytochromes |Cytochrome c'-like |automated matches |Achromobacter xylosoxidans [TaxId: 85698]
d1n97a_ : (PRO201) (LEU264) [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Cyp175a1 |Thermus thermophilus [TaxId: 274]
d4ek1b_ : (ASP218) (ARG291) [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450-CAM |Pseudomonas putida [TaxId: 303]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, a.104, c.79, c.66, d.92, d.3, a.96, e.11, a.123, d.20, a.39, a.124, a.24, a.116, a.289, a.2, e.29, f.28