Tableau information
Concept source: d4p3ac_ amino acid (a.a.) range (ASN679)(GLU745)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HHHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASN679) (ALA692) H1
(SER697) (ARG708) H2
(THR714) (ALA720) H3
(PRO726) (GLU745) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 153.3° H2
H3 -47.9° 133.5° H3
H4 157.1° -32.7° 154.5°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1zoib_ : (LYS140) (PHE203) [view usage] : c.69.1.12 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Haloperoxidase |automated matches |Pseudomonas putida [TaxId: 303]
d1wgwa_ : (ALA8) (LYS89) [view usage] : a.24.13.1 |Four-helical up-and-down bundle |Domain of the SRP/SRP receptor G-proteins |Domain of the SRP/SRP receptor G-proteins |Signal recognition particle 54 kDa protein, SRP54 |Mouse (Mus musculus) [TaxId: 10090]
d1ffha1 : (GLN3) (GLY87) [view usage] : a.24.13.1 |Four-helical up-and-down bundle |Domain of the SRP/SRP receptor G-proteins |Domain of the SRP/SRP receptor G-proteins |Signal sequence recognition protein Ffh |Thermus aquaticus [TaxId: 271]
d4p3ab_ : (LEU680) (ARG743) [view usage] : a.50.1.1 |Anaphylotoxins (complement system) |Anaphylotoxins (complement system) |Anaphylotoxins (complement system) |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d4ggnc_ : (ASP80) (CYS135) [view usage] : a.39.1.0 |EF Hand-like |EF-hand |automated matches |automated matches |Plasmodium knowlesi [TaxId: 5851]
d4p3ac_ : (ASN679) (GLU745) [view usage] : a.50.1.1 |Anaphylotoxins (complement system) |Anaphylotoxins (complement system) |Anaphylotoxins (complement system) |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2k7ca_ : (VAL101) (ARG167) [view usage] : a.39.1.0 |EF Hand-like |EF-hand |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1f71a_ : (GLU83) (LYS148) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Calmodulin |African clawed frog (Xenopus laevis) [TaxId: 8355]
d2rrta_ : (SER5) (ALA71) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |automated matches |African clawed frog (Xenopus laevis) [TaxId: 8355]
d1j8mf1 : (LEU3) (GLY85) [view usage] : a.24.13.1 |Four-helical up-and-down bundle |Domain of the SRP/SRP receptor G-proteins |Domain of the SRP/SRP receptor G-proteins |Signal sequence recognition protein Ffh |Acidianus ambivalens [TaxId: 2283]
d1jpja1 : (GLN3) (GLY87) [view usage] : a.24.13.1 |Four-helical up-and-down bundle |Domain of the SRP/SRP receptor G-proteins |Domain of the SRP/SRP receptor G-proteins |Signal sequence recognition protein Ffh |Thermus aquaticus [TaxId: 271]
d2qy9a1 : (LEU210) (ASP283) [view usage] : a.24.13.1 |Four-helical up-and-down bundle |Domain of the SRP/SRP receptor G-proteins |Domain of the SRP/SRP receptor G-proteins |Signal recognition particle receptor, FtsY |Escherichia coli [TaxId: 562]
d1oxba_ : (GLN76) (TYR163) [view usage] : a.24.10.2 |Four-helical up-and-down bundle |Histidine-containing phosphotransfer domain, HPT domain |Phosphorelay protein-like |Phosphorelay protein ypd1 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4ggnb_ : (ASP80) (CYS135) [view usage] : a.39.1.0 |EF Hand-like |EF-hand |automated matches |automated matches |Plasmodium knowlesi [TaxId: 5851]
d3cu7aa : (GLN680) (ASN741) [view usage] : a.50.1.1 |Anaphylotoxins (complement system) |Anaphylotoxins (complement system) |Anaphylotoxins (complement system) |C5a anaphylotoxin |Human (Homo sapiens) [TaxId: 9606]
d2itba1 : (TYR95) (GLN187) [view usage] : a.25.1.7 |Ferritin-like |Ferritin-like |MiaE-like |Putative tRNA-(Ms(2)io(6)a)-hydroxylase PP2188 |Pseudomonas putida [TaxId: 303]
d3nkcb_ : (SER177) (LEU227) [view usage] : f.19.1.1 |Aquaporin-like |Aquaporin-like |Aquaporin-like |automated matches |Escherichia coli K-12 [TaxId: 83333]
d3nkca_ : (SER177) (LEU227) [view usage] : f.19.1.1 |Aquaporin-like |Aquaporin-like |Aquaporin-like |automated matches |Escherichia coli K-12 [TaxId: 83333]
d4jk9b_ : (TYR1920) (ALA1989) [view usage] : c.55.3.14 |Ribonuclease H-like motif |Ribonuclease H-like |Prp8 beta-finger domain-like |Pre-mRNA-splicing factor 8, Prp8 |Human (Homo sapiens) [TaxId: 9606]
d1cb1a_ : (SER2) (LYS71) [view usage] : a.39.1.1 |EF Hand-like |EF-hand |Calbindin D9K |Calbindin D9K |Pig (Sus scrofa) [TaxId: 9823]
d2bcra1 : (LEU254) (GLY320) [view usage] : a.60.6.0 |SAM domain-like |DNA polymerase beta, N-terminal domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2m5ra_ : (ASN2) (LYS80) [view usage] : a.28.1.0 |Acyl carrier protein-like |ACP-like |automated matches |automated matches |Leishmania major [TaxId: 5664]
d2lmta_ : (GLU7) (ASP80) [view usage] : a.39.1.0 |EF Hand-like |EF-hand |automated matches |automated matches |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d4p3aa_ : (LEU680) (ALA739) [view usage] : a.50.1.1 |Anaphylotoxins (complement system) |Anaphylotoxins (complement system) |Anaphylotoxins (complement system) |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1c02a_ : (GLN76) (ASN164) [view usage] : a.24.10.2 |Four-helical up-and-down bundle |Histidine-containing phosphotransfer domain, HPT domain |Phosphorelay protein-like |Phosphorelay protein ypd1 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2b2fa_ : (GLY152) (ILE260) [view usage] : f.44.1.0 |Ammonium transporter |Ammonium transporter |automated matches |automated matches |Archaeoglobus fulgidus [TaxId: 2234]
d1gm0a_ : (ALA73) (ALA140) [view usage] : a.39.2.1 |EF Hand-like |Insect pheromone/odorant-binding proteins |Insect pheromone/odorant-binding proteins |Moth pheromone-binding protein, PBP |Silkworm (Bombyx mori) [TaxId: 7091]
d2k2aa_ : (ARG94) (GLY155) [view usage] : a.39.1.0 |EF Hand-like |EF-hand |automated matches |automated matches |Lethocerus indicus [TaxId: 212017]
d1rzte1 : (ASN253) (GLY320) [view usage] : a.60.6.1 |SAM domain-like |DNA polymerase beta, N-terminal domain-like |DNA polymerase beta, N-terminal domain-like |DNA polymerase lambda |Human (Homo sapiens) [TaxId: 9606]
d2fjya_ : (MET74) (VAL142) [view usage] : a.39.2.1 |EF Hand-like |Insect pheromone/odorant-binding proteins |Insect pheromone/odorant-binding proteins |Moth pheromone-binding protein, PBP |Silkworm (Bombyx mori) [TaxId: 7091]
d2itbb_ : (TYR95) (GLN187) [view usage] : a.25.1.7 |Ferritin-like |Ferritin-like |MiaE-like |Putative tRNA-(Ms(2)io(6)a)-hydroxylase PP2188 |Pseudomonas putida [TaxId: 303]
d1ftsa1 : (LEU210) (ASP283) [view usage] : a.24.13.1 |Four-helical up-and-down bundle |Domain of the SRP/SRP receptor G-proteins |Domain of the SRP/SRP receptor G-proteins |Signal recognition particle receptor, FtsY |Escherichia coli [TaxId: 562]
d1qspa_ : (GLN76) (TYR163) [view usage] : a.24.10.2 |Four-helical up-and-down bundle |Histidine-containing phosphotransfer domain, HPT domain |Phosphorelay protein-like |Phosphorelay protein ypd1 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4jk8b_ : (TYR1920) (ASP1990) [view usage] : c.55.3.14 |Ribonuclease H-like motif |Ribonuclease H-like |Prp8 beta-finger domain-like |Pre-mRNA-splicing factor 8, Prp8 |Human (Homo sapiens) [TaxId: 9606]
d1dmoa_ : (SER81) (GLN143) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Calmodulin |African clawed frog (Xenopus laevis) [TaxId: 8355]
d3dphb_ : (ARG162) (CYS218) [view usage] : a.28.3.1 |Acyl carrier protein-like |Retrovirus capsid dimerization domain-like |Retrovirus capsid protein C-terminal domain |HIV capsid protein, dimerisation domain |Human immunodeficiency virus type 1 [TaxId: 11676]
d2j7pa1 : (SER6) (GLY87) [view usage] : a.24.13.1 |Four-helical up-and-down bundle |Domain of the SRP/SRP receptor G-proteins |Domain of the SRP/SRP receptor G-proteins |Signal sequence recognition protein Ffh |Thermus aquaticus [TaxId: 271]
d2a73b3 : (LEU653) (ALA719) [view usage] : a.50.1.1 |Anaphylotoxins (complement system) |Anaphylotoxins (complement system) |Anaphylotoxins (complement system) |C3 ANA (anaphylatoxin) domain |Human (Homo sapiens) [TaxId: 9606]
d1rzta1 : (LEU254) (GLY320) [view usage] : a.60.6.1 |SAM domain-like |DNA polymerase beta, N-terminal domain-like |DNA polymerase beta, N-terminal domain-like |DNA polymerase lambda |Human (Homo sapiens) [TaxId: 9606]
d1ry1u_ : (GLN3) (GLY87) [view usage] : i.22.1.1 |Signal recognition particle (SRP) complex |Signal recognition particle (SRP) complex |Signal recognition particle (SRP) complex |Signal recognition particle (SRP) complex |interspecies complex
d2yhsa1 : (LEU210) (ASP283) [view usage] : a.24.13.0 |Four-helical up-and-down bundle |Domain of the SRP/SRP receptor G-proteins |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d3tzla_ : (SER203) (PHE274) [view usage] : c.26.1.0 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |automated matches |automated matches |Campylobacter jejuni [TaxId: 192222]
d2kpha_ : (GLU75) (GLU141) [view usage] : a.39.2.1 |EF Hand-like |Insect pheromone/odorant-binding proteins |Insect pheromone/odorant-binding proteins |automated matches |Amyelois transitella [TaxId: 680683]
d1b0pa4 : (ALA546) (LEU613) [view usage] : c.64.1.1 |Pyruvate-ferredoxin oxidoreductase, PFOR, domain III |Pyruvate-ferredoxin oxidoreductase, PFOR, domain III |Pyruvate-ferredoxin oxidoreductase, PFOR, domain III |Pyruvate-ferredoxin oxidoreductase, PFOR, domain III |Desulfovibrio africanus [TaxId: 873]
d1okka1 : (SER6) (GLY87) [view usage] : a.24.13.1 |Four-helical up-and-down bundle |Domain of the SRP/SRP receptor G-proteins |Domain of the SRP/SRP receptor G-proteins |Signal sequence recognition protein Ffh |Thermus aquaticus [TaxId: 271]
d2dika3 : (ASN112) (MET191) [view usage] : d.142.1.5 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |Pyruvate phosphate dikinase, N-terminal domain |Pyruvate phosphate dikinase, N-terminal domain |Clostridium symbiosum [TaxId: 1512]
d4ur8a_ : (ARG234) (GLY297) [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Agrobacterium tumefaciens [TaxId: 358]
d3c5gb1 : (LEU254) (GLU318) [view usage] : a.60.6.1 |SAM domain-like |DNA polymerase beta, N-terminal domain-like |DNA polymerase beta, N-terminal domain-like |DNA polymerase lambda |Human (Homo sapiens) [TaxId: 9606]
d4jkab_ : (TYR1920) (ALA1989) [view usage] : c.55.3.14 |Ribonuclease H-like motif |Ribonuclease H-like |Prp8 beta-finger domain-like |Pre-mRNA-splicing factor 8, Prp8 |Human (Homo sapiens) [TaxId: 9606]
d3mdca1 : (LEU254) (GLY320) [view usage] : a.60.6.1 |SAM domain-like |DNA polymerase beta, N-terminal domain-like |DNA polymerase beta, N-terminal domain-like |DNA polymerase lambda |Human (Homo sapiens) [TaxId: 9606]
d4p3ad_ : (LEU680) (GLU745) [view usage] : a.50.1.1 |Anaphylotoxins (complement system) |Anaphylotoxins (complement system) |Anaphylotoxins (complement system) |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2aqfa_ : (ASN24) (GLY85) [view usage] : a.4.1.18 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |SWIRM domain |Transcriptional adaptor 2-like, TADA2L |Mouse (Mus musculus) [TaxId: 10090]
d1dk2a_ : (ASN12) (ALA78) [view usage] : a.60.6.1 |SAM domain-like |DNA polymerase beta, N-terminal domain-like |DNA polymerase beta, N-terminal domain-like |DNA polymerase beta, N-terminal (8 kD)-domain |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3b4ub_ : (PRO232) (ARG290) [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Agrobacterium tumefaciens [TaxId: 176299]
d2woca_ : (MET183) (THR258) [view usage] : a.209.1.0 |ADP-ribosylglycohydrolase |ADP-ribosylglycohydrolase |automated matches |automated matches |Rhodospirillum rubrum [TaxId: 1085]
d3g9da_ : (ASP182) (THR258) [view usage] : a.209.1.0 |ADP-ribosylglycohydrolase |ADP-ribosylglycohydrolase |automated matches |automated matches |Azospirillum brasilense [TaxId: 192]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.69, c.26, c.55, a.25, i.22, d.142, a.4, a.39, f.19, a.24, a.60, a.28, a.209, f.44, a.50, c.64