Tableau information
Concept source: d4e1ea_ amino acid (a.a.) range (SER275)(LYS340)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HHHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(SER275) (LYS284) H1
(ASN286) (ASN296) H2
(ASP301) (ASN316) H3
(LEU317) (LYS340) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -146.7° H2
H3 58.2° -154.6° H3
H4 114.1° -90.0° 67.6°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2f89f_ : (SER268) (ASP320) [view usage] : a.128.1.1 |Terpenoid synthases |Terpenoid synthases |Isoprenyl diphosphate synthases |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2hp6b_ : (PRO72) (SER140) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |Class D beta-lactamase |Pseudomonas aeruginosa, OXA-10 [TaxId: 287]
d3e9oa1 : (SER2000) (GLY2085) [view usage] : c.55.3.14 |Ribonuclease H-like motif |Ribonuclease H-like |Prp8 beta-finger domain-like |Pre-mRNA-splicing factor 8, Prp8 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1vgma_ : (ASP266) (GLN354) [view usage] : a.103.1.1 |Citrate synthase |Citrate synthase |Citrate synthase |automated matches |Sulfolobus tokodaii [TaxId: 111955]
d2ifca_ : (ASP269) (GLN359) [view usage] : a.103.1.1 |Citrate synthase |Citrate synthase |Citrate synthase |automated matches |Thermoplasma acidophilum [TaxId: 2303]
d2wb0x1 : (ALA180) (GLU257) [view usage] : a.54.1.1 |Domain of early E2A DNA-binding protein, ADDBP |Domain of early E2A DNA-binding protein, ADDBP |Domain of early E2A DNA-binding protein, ADDBP |Domain of early E2A DNA-binding protein, ADDBP |Human adenovirus type 5 [TaxId: 28285]
d3lzgd_ : (LEU126) (ARG170) [view usage] : h.3.1.1 |Stalk segment of viral fusion proteins |Influenza hemagglutinin (stalk) |Influenza hemagglutinin (stalk) |automated matches |Influenza A virus [TaxId: 641501]
d1o7xb_ : (ASP265) (GLU351) [view usage] : a.103.1.1 |Citrate synthase |Citrate synthase |Citrate synthase |Citrate synthase |Sulfolobus solfataricus [TaxId: 2287]
d1b79a_ : (ILE30) (GLY94) [view usage] : a.81.1.1 |N-terminal domain of DnaB helicase |N-terminal domain of DnaB helicase |N-terminal domain of DnaB helicase |N-terminal domain of DnaB helicase |Escherichia coli [TaxId: 562]
d3h1hh_ : (LEU17) (LYS76) [view usage] : f.28.1.1 |Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |automated matches |Chicken (Gallus gallus) [TaxId: 9031]
d1anva1 : (ALA180) (GLU257) [view usage] : a.54.1.1 |Domain of early E2A DNA-binding protein, ADDBP |Domain of early E2A DNA-binding protein, ADDBP |Domain of early E2A DNA-binding protein, ADDBP |Domain of early E2A DNA-binding protein, ADDBP |Human adenovirus type 5 [TaxId: 28285]
d1o7xa_ : (ARG267) (VAL350) [view usage] : a.103.1.1 |Citrate synthase |Citrate synthase |Citrate synthase |Citrate synthase |Sulfolobus solfataricus [TaxId: 2287]
d2ifcd_ : (ASP269) (GLN359) [view usage] : a.103.1.1 |Citrate synthase |Citrate synthase |Citrate synthase |automated matches |Thermoplasma acidophilum [TaxId: 2303]
d1m8za_ : (VAL1069) (ASP1118) [view usage] : a.118.1.8 |alpha-alpha superhelix |ARM repeat |Pumilio repeat |Pumilio 1 |Human (Homo sapiens) [TaxId: 9606]
d3kphb_ : (ASN64) (LYS147) [view usage] : a.202.1.1 |Superantigen MAM |Superantigen MAM |Superantigen MAM |automated matches |Mycoplasma arthritidis [TaxId: 2111]
d1pp9h_ : (PRO16) (LEU77) [view usage] : f.28.1.1 |Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |Cow (Bos taurus) [TaxId: 9913]
d3sbta_ : (SER2000) (GLY2085) [view usage] : c.55.3.14 |Ribonuclease H-like motif |Ribonuclease H-like |Prp8 beta-finger domain-like |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
d1v4ha_ : (ASN225) (SER283) [view usage] : a.128.1.1 |Terpenoid synthases |Terpenoid synthases |Isoprenyl diphosphate synthases |Octoprenyl-diphosphate synthase |Thermotoga maritima [TaxId: 2336]
d2dyda_ : (GLU38) (ALA81) [view usage] : a.144.1.0 |PABP domain-like |PABC (PABP) domain |automated matches |automated matches |Wheat (Triticum aestivum) [TaxId: 4565]
d2fffb1 : (TYR468) (GLY543) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |Penicillin-binding protein 1b, transpeptidase domain |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d2f8cf_ : (TRP269) (ASP320) [view usage] : a.128.1.1 |Terpenoid synthases |Terpenoid synthases |Isoprenyl diphosphate synthases |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ntmh_ : (ASP15) (LEU77) [view usage] : f.28.1.1 |Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |Cow (Bos taurus) [TaxId: 9913]
d2wkib_ : (ALA66) (SER140) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |Class D beta-lactamase |Pseudomonas aeruginosa, OXA-10 [TaxId: 287]
d2gsmc_ : (PRO176) (GLY269) [view usage] : f.24.1.1 |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Bacterial aa3 type cytochrome c oxidase subunit I |Rhodobacter sphaeroides [TaxId: 1063]
d1e1da_ : (PRO24) (GLY135) [view usage] : e.26.1.1 |Prismane protein-like |Prismane protein-like |Hybrid cluster protein (prismane protein) |Hybrid cluster protein (prismane protein) |Desulfovibrio vulgaris [TaxId: 881]
d4ng6a_ : (TRP269) (ASP320) [view usage] : a.128.1.1 |Terpenoid synthases |Terpenoid synthases |Isoprenyl diphosphate synthases |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2gsma_ : (PRO176) (GLY269) [view usage] : f.24.1.1 |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Bacterial aa3 type cytochrome c oxidase subunit I |Rhodobacter sphaeroides [TaxId: 1063]
d2f7mf_ : (SER268) (GLN331) [view usage] : a.128.1.1 |Terpenoid synthases |Terpenoid synthases |Isoprenyl diphosphate synthases |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3dtuc_ : (PRO176) (GLY269) [view usage] : f.24.1.1 |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Bacterial aa3 type cytochrome c oxidase subunit I |Rhodobacter sphaeroides [TaxId: 1063]
d2bg1a1 : (TYR468) (GLY543) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |Penicillin-binding protein 1b, transpeptidase domain |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d3h1hu_ : (LEU17) (LEU77) [view usage] : f.28.1.1 |Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |automated matches |Chicken (Gallus gallus) [TaxId: 9031]
d1lo1a_ : (GLU121) (ARG174) [view usage] : g.39.1.2 |Glucocorticoid receptor-like (DNA-binding domain) |Glucocorticoid receptor-like (DNA-binding domain) |Nuclear receptor |Steroid hormone receptor Err2 DNA-binding domain |Human (Homo sapiens) [TaxId: 9606]
d4dwba_ : (SER275) (TYR324) [view usage] : a.128.1.0 |Terpenoid synthases |Terpenoid synthases |automated matches |automated matches |Trypanosoma cruzi [TaxId: 5693]
d1v4ka_ : (SER229) (SER283) [view usage] : a.128.1.1 |Terpenoid synthases |Terpenoid synthases |Isoprenyl diphosphate synthases |Octoprenyl-diphosphate synthase |Thermotoga maritima [TaxId: 2336]
d1b79b_ : (ILE30) (GLY94) [view usage] : a.81.1.1 |N-terminal domain of DnaB helicase |N-terminal domain of DnaB helicase |N-terminal domain of DnaB helicase |N-terminal domain of DnaB helicase |Escherichia coli [TaxId: 562]
d3n6kf_ : (SER268) (GLN331) [view usage] : a.128.1.1 |Terpenoid synthases |Terpenoid synthases |Isoprenyl diphosphate synthases |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1v9db_ : (SER953) (HIS1014) [view usage] : a.207.1.1 |Formin homology 2 domain (FH2 domain) |Formin homology 2 domain (FH2 domain) |Formin homology 2 domain (FH2 domain) |Diaphanous protein homolog 1, dia1 |Mouse (Mus musculus) [TaxId: 10090]
d1j5sa_ : (HIS56) (VAL93) [view usage] : c.1.9.8 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Uronate isomerase-like |Uronate isomerase TM0064 |Thermotoga maritima [TaxId: 2336]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.3, c.1, a.118, a.128, c.55, a.103, f.24, h.3, e.26, a.81, a.54, a.144, g.39, a.207, a.202, f.28