Protein Concepts Dictionary

Tableau information

Concept source:  d2zk7b_  amino acid (a.a.) range (THR179)(ASP242)

nSSEs in this Concept: 4

String of secondary struct.elems. (SSEs) defining this concept: HHHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (THR179)  (GLU189) H1
	  (MET195)  (HIS206) H2
	  (PRO216)  (SER228) H3
	  (GLY236)  (ASP242) E4

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                          
H2      109.8°   H2                   
H3      145.4°   48.7°   H3            
E4      -50.6° -122.7°  159.7°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±12.4°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d4hwka_ :   (THR200)  (ASP254)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Sepiapterin reductase |Human (Homo sapiens) [TaxId: 9606]
 d1nw3a_ :   (THR104)  (ASP155)   [view usage] : c.66.1.31 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Catalytic, N-terminal domain of histone methyltransferase Dot1l |Catalytic, N-terminal domain of histone methyltransferase Dot1l |Human (Homo sapiens) [TaxId: 9606]
 d1yded_ :   (THR189)  (THR246)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1n5da_ :   (THR163)  (GLY228)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Carbonyl reductase/20beta-hydroxysteroid dehydrogenase |Pig (Sus scrofa) [TaxId: 9823]
 d4qeca_ :   (THR188)  (ASP243)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Staphylococcus epidermidis [TaxId: 1282]
 d4fc6b_ :   (THR214)  (ASP268)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2zk7b_ :   (THR179)  (ASP242)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Thermoplasma acidophilum [TaxId: 2303]
 d1ydep_ :   (THR189)  (THR246)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d4h15a_ :   (THR186)  (ASP252)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Sinorhizobium meliloti [TaxId: 266834]
 d3ucea_ :   (THR163)  (ASP217)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Vibrio vulnificus [TaxId: 196600]
 d1mbza1 :   (GLY349)  (HIS397)   [view usage] : c.26.2.1 |Adenine nucleotide alpha hydrolase-like |Adenine nucleotide alpha hydrolases-like |N-type ATP pyrophosphatases |beta-Lactam synthetase |Streptomyces clavuligerus [TaxId: 1901]
 d4qeda_ :   (THR188)  (ASP243)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Staphylococcus epidermidis [TaxId: 1282]
 d1z6zc_ :   (THR200)  (PHE255)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Sepiapterin reductase |Human (Homo sapiens) [TaxId: 9606]
 d3f0rb_ :    (THR72)  (SER138)   [view usage] : c.42.1.2 |Arginase/deacetylase |Arginase/deacetylase |Histone deacetylase, HDAC |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1fiua_ :     (LEU4)   (LYS95)   [view usage] : c.52.1.10 |Restriction endonuclease-like |Restriction endonuclease-like |Restriction endonuclease NgoIV |Restriction endonuclease NgoIV |Neisseria gonorrhoeae [TaxId: 485]
 d1ydef_ :   (THR189)  (THR246)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1z6za1 :   (THR200)  (PHE255)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Sepiapterin reductase |Human (Homo sapiens) [TaxId: 9606]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   c.2,    c.26,    c.66,    c.42,    c.52