Tableau information
Concept source: d2fzda_ amino acid (a.a.) range (ASP230)(ASP277)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HHEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASP230) (ASN241) H1
(THR243) (ASN256) H2
(VAL258) (LYS262) E3
(THR265) (ASP277) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 86.9° H2
E3 -105.6° 155.4° E3
H4 66.6° -44.1° 160.5°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2haua1 : (SER492) (THR542) [view usage] : c.94.1.2 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Transferrin |Transferrin |Human (Homo sapiens) [TaxId: 9606]
d1lucb_ : (ASP259) (VAL320) [view usage] : c.1.16.1 |TIM beta/alpha-barrel |Bacterial luciferase-like |Bacterial luciferase (alkanal monooxygenase) |Bacterial luciferase beta chain, LuxB |Vibrio harveyi [TaxId: 669]
d1rhca_ : (ASP261) (GLY301) [view usage] : c.1.16.3 |TIM beta/alpha-barrel |Bacterial luciferase-like |F420 dependent oxidoreductases |Coenzyme F420 dependent secondary alcohol dehydrogenase |Methanoculleus thermophilicus [TaxId: 2200]
d1n04a1 : (GLN168) (ASN216) [view usage] : c.94.1.2 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Transferrin |Ovotransferrin |Chicken (Gallus gallus) [TaxId: 9031]
d2wbka3 : (GLY592) (ALA677) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |automated matches |Bacteroides thetaiotaomicron [TaxId: 226186]
d1vytb2 : (THR316) (THR360) [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |Guanylate kinase-like domain of the L-type calcium channel |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2je8a5 : (SER594) (ALA677) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Five-domain beta-mannosidase, domain 3 |Bacteroides thetaiotaomicron [TaxId: 818]
d4puca_ : (ALA45) (VAL103) [view usage] : a.118.8.6 |alpha-alpha superhelix |TPR-like |SusD-like |automated matches |Bacteroides uniformis [TaxId: 411479]
d2q8za_ : (ALA66) (ASN130) [view usage] : c.1.2.3 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |Decarboxylase |Protozoan orotidine monophosphate decarboxylase |Plasmodium falciparum (isolate 3D7) (Plasmodium falciparum 3D7) [TaxId: 36329]
d1cvra2 : (VAL42) (GLN98) [view usage] : c.17.1.2 |Caspase-like |Caspase-like |Gingipain R (RgpB), N-terminal domain |Gingipain R (RgpB), N-terminal domain |Porphyromonas gingivalis [TaxId: 837]
d1hr6b2 : (SER410) (GLN462) [view usage] : d.185.1.1 |LuxS/MPP-like metallohydrolase |LuxS/MPP-like metallohydrolase |MPP-like |Mitochondrial processing peptidase (MPP) beta chain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1yzya1 : (PRO310) (GLY365) [view usage] : c.146.1.1 |YgbK-like |YgbK-like |YgbK-like |Hypothetical protein HI1011 |Haemophilus influenzae [TaxId: 727]
d4bnqa_ : (ILE29) (ARG86) [view usage] : c.51.4.0 |Anticodon-binding domain-like |ITPase-like |automated matches |automated matches |Staphylococcus aureus [TaxId: 46170]
d1bslb_ : (ASP259) (SER324) [view usage] : c.1.16.1 |TIM beta/alpha-barrel |Bacterial luciferase-like |Bacterial luciferase (alkanal monooxygenase) |Bacterial luciferase beta chain, LuxB |Vibrio harveyi [TaxId: 669]
d1xxea2 : (ASN213) (LYS268) [view usage] : d.14.1.7 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC |UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC |Aquifex aeolicus [TaxId: 63363]
d4iyja_ : (SER18) (ALA64) [view usage] : c.23.10.0 |Flavodoxin-like |SGNH hydrolase |automated matches |automated matches |Bacteroides uniformis [TaxId: 411479]
d4luib_ : (HIS136) (ILE178) [view usage] : c.1.2.0 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |automated matches |automated matches |Methanocaldococcus jannaschii [TaxId: 243232]
d3ejga_ : (SER122) (GLY165) [view usage] : c.50.1.0 |Macro domain-like |Macro domain-like |automated matches |automated matches |Human coronavirus 229E [TaxId: 11137]
d1kdra_ : (THR93) (PHE138) [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |CMP kinase |Escherichia coli [TaxId: 562]
d3fgcb_ : (ASP259) (ASN318) [view usage] : c.1.16.1 |TIM beta/alpha-barrel |Bacterial luciferase-like |Bacterial luciferase (alkanal monooxygenase) |automated matches |Vibrio harveyi [TaxId: 669]
d1i29a_ : (SER84) (GLY138) [view usage] : c.67.1.3 |PLP-dependent transferase-like |PLP-dependent transferases |Cystathionine synthase-like |NifS-like protein/selenocysteine lyase |Escherichia coli [TaxId: 562]
d2frha_ : (CYS109) (LEU160) [view usage] : a.4.5.28 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |MarR-like transcriptional regulators |Pleiotropic regulator of virulence genes, SarA |Staphylococcus aureus [TaxId: 1280]
d2tmga2 : (ASP110) (ASN162) [view usage] : c.58.1.1 |Aminoacid dehydrogenase-like, N-terminal domain |Aminoacid dehydrogenase-like, N-terminal domain |Aminoacid dehydrogenases |Glutamate dehydrogenase |Thermotoga maritima [TaxId: 2336]
d1ye4a_ : (HIS242) (GLN283) [view usage] : c.1.7.1 |TIM beta/alpha-barrel |NAD(P)-linked oxidoreductase |Aldo-keto reductases (NADP) |Xylose reductase |Fungus (Candida tenuis) [TaxId: 45596]
d2z9ob2 : (ASN144) (GLU190) [view usage] : a.4.5.10 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Replication initiation protein |RepE54 |Escherichia coli, mini-F plasmid [TaxId: 562]
d1brlb_ : (ASP259) (ILE319) [view usage] : c.1.16.1 |TIM beta/alpha-barrel |Bacterial luciferase-like |Bacterial luciferase (alkanal monooxygenase) |Bacterial luciferase beta chain, LuxB |Vibrio harveyi [TaxId: 669]
d1z9aa_ : (HIS242) (SER286) [view usage] : c.1.7.1 |TIM beta/alpha-barrel |NAD(P)-linked oxidoreductase |Aldo-keto reductases (NADP) |Xylose reductase |Fungus (Candida tenuis) [TaxId: 45596]
d1p42a2 : (ASN225) (GLN279) [view usage] : d.14.1.7 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC |UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC |Aquifex aeolicus [TaxId: 63363]
d1zp6a1 : (LEU58) (ALA102) [view usage] : c.37.1.25 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Atu3015-like |Hypothetical protein Atu3015 |Agrobacterium tumefaciens [TaxId: 358]
d5gcna_ : (ALA86) (GLY129) [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |Catalytic domain of GCN5 histone acetyltransferase |Tetrahymena thermophila [TaxId: 5911]
d2fnpa1 : (ASP108) (LEU160) [view usage] : a.4.5.28 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |MarR-like transcriptional regulators |Pleiotropic regulator of virulence genes, SarA |Staphylococcus aureus [TaxId: 1280]
d1zsxa_ : (LYS274) (GLY321) [view usage] : c.1.7.1 |TIM beta/alpha-barrel |NAD(P)-linked oxidoreductase |Aldo-keto reductases (NADP) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2vqua5 : (ASN593) (ALA677) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Five-domain beta-mannosidase, domain 3 |Bacteroides thetaiotaomicron [TaxId: 818]
d1sija4 : (VAL867) (ALA907) [view usage] : d.133.1.1 |Molybdenum cofactor-binding domain |Molybdenum cofactor-binding domain |Molybdenum cofactor-binding domain |Aldehyde oxidoreductase |Desulfovibrio gigas [TaxId: 879]
d4luja_ : (HIS136) (GLU180) [view usage] : c.1.2.0 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |automated matches |automated matches |Methanocaldococcus jannaschii [TaxId: 243232]
d1t3la2 : (HIS364) (THR410) [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |Guanylate kinase-like domain of the L-type calcium channel |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
d3ehnb_ : (LEU34) (THR69) [view usage] : a.118.8.0 |alpha-alpha superhelix |TPR-like |automated matches |automated matches |Bacteroides thetaiotaomicron [TaxId: 818]
d1jmjb_ : (HIS163) (PHE226) [view usage] : e.1.1.1 |Serpins |Serpins |Serpins |Heparin cofactor II (Hc-II, leuserpin 2) |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.67, c.94, a.118, c.23, c.37, d.185, d.14, d.108, d.133, c.51, c.50, e.1, a.4, c.58, c.17, c.146