Tableau information
Concept source: d1nb4b_ amino acid (a.a.) range (TYR191)(VAL228)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HHEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(TYR191) (SER196) H1
(SER196) (SER210) H2
(CYS213) (ARG222) E3
(CYS223) (VAL228) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 119.3° H2
E3 -107.6° 130.3° E3
H4 -141.0° 76.8° 76.8°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1ecca1 : (LEU415) (ASN450) [view usage] : c.61.1.1 |PRTase-like |PRTase-like |Phosphoribosyltransferases (PRTases) |Glutamine PRPP amidotransferase, C-terminal domain |Escherichia coli [TaxId: 562]
d1wx5a_ : (SER56) (LEU104) [view usage] : a.86.1.3 |Di-copper centre-containing domain |Di-copper centre-containing domain |Tyrosinase |Tyrosinase |Streptomyces castaneoglobisporus [TaxId: 79261]
d3rnba_ : (LEU450) (TYR491) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |Toluene, o-xylene monooxygenase oxygenase subunit TouA |Pseudomonas sp. [TaxId: 320855]
d2xhub_ : (GLY188) (VAL228) [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |automated matches |Hepatitis C virus [TaxId: 11103]
d1yv2a_ : (GLY188) (VAL228) [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |automated matches |Hepatitis C virus [TaxId: 11103]
d1ecfb1 : (LEU415) (ASN450) [view usage] : c.61.1.1 |PRTase-like |PRTase-like |Phosphoribosyltransferases (PRTases) |Glutamine PRPP amidotransferase, C-terminal domain |Escherichia coli [TaxId: 562]
d4anca_ : (ASN93) (TRP132) [view usage] : d.58.6.0 |Ferredoxin-like |Nucleoside diphosphate kinase, NDK |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d3o3fa_ : (ASP45) (LEU79) [view usage] : c.55.3.1 |Ribonuclease H-like motif |Ribonuclease H-like |Ribonuclease H |automated matches |Thermotoga maritima [TaxId: 2336]
d1n7za_ : (PRO213) (LEU263) [view usage] : b.127.1.1 |Baseplate structural protein gp8 |Baseplate structural protein gp8 |Baseplate structural protein gp8 |Baseplate structural protein gp8 |Bacteriophage T4 [TaxId: 10665]
d4khra_ : (TYR191) (VAL228) [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |Viral RNA polymerase |Hepatitis c virus subtype 1a [TaxId: 31646]
d2z9oa2 : (ARG145) (GLU190) [view usage] : a.4.5.10 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Replication initiation protein |RepE54 |Escherichia coli, mini-F plasmid [TaxId: 562]
d1jmaa_ : (PRO205) (GLY240) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |HSV glycoprotein D |Herpes simplex virus type 1 [TaxId: 10298]
d4khma_ : (PRO197) (VAL228) [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |Viral RNA polymerase |Hepatitis c virus subtype 1a [TaxId: 31646]
d1ynha_ : (ARG354) (VAL380) [view usage] : d.126.1.7 |Pentein, beta/alpha-propeller |Pentein |Succinylarginine dihydrolase-like |automated matches |Escherichia coli [TaxId: 562]
d1kwma2 : (LYS57) (ALA88) [view usage] : d.58.3.1 |Ferredoxin-like |Protease propeptides/inhibitors |Pancreatic carboxypeptidase, activation domain |Procarboxypeptidase B |Human (Homo sapiens) [TaxId: 9606]
d1ynia1 : (ARG354) (VAL380) [view usage] : d.126.1.7 |Pentein, beta/alpha-propeller |Pentein |Succinylarginine dihydrolase-like |Succinylarginine dihydrolase |Escherichia coli [TaxId: 562]
d1csja_ : (TYR191) (VAL228) [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |Viral RNA polymerase |Hepatitis C virus [TaxId: 11103]
d3awta_ : (SER56) (LEU104) [view usage] : a.86.1.3 |Di-copper centre-containing domain |Di-copper centre-containing domain |Tyrosinase |Tyrosinase |Streptomyces castaneoglobisporus [TaxId: 79261]
d1gx6a_ : (TYR191) (VAL228) [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |Viral RNA polymerase |Hepatitis C virus [TaxId: 11103]
d1ecbc1 : (LEU415) (ASN450) [view usage] : c.61.1.1 |PRTase-like |PRTase-like |Phosphoribosyltransferases (PRTases) |Glutamine PRPP amidotransferase, C-terminal domain |Escherichia coli [TaxId: 562]
d2xi2a_ : (TYR191) (VAL228) [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |automated matches |Hepatitis C virus [TaxId: 11103]
d1ck4b_ : (ASP262) (ASN293) [view usage] : c.62.1.1 |vWA-like |vWA-like |Integrin A (or I) domain |Integrin alpha1-beta1 |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1up3a_ : (SER171) (SER215) [view usage] : c.6.1.1 |7-stranded beta/alpha barrel |Glycosyl hydrolases family 6, cellulases |Glycosyl hydrolases family 6, cellulases |Putative cellulase Rv0062 (Cel6, CelA1) |Mycobacterium tuberculosis [TaxId: 1773]
d3fz4a_ : (SER77) (ASP116) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Streptococcus mutans [TaxId: 210007]
d1j0ea_ : (GLU274) (SER333) [view usage] : c.79.1.1 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |1-aminocyclopropane-1-carboxylate deaminase |Yeast (Hansenula saturnus) [TaxId: 4906]
d2ccda1 : (ASP240) (GLY285) [view usage] : a.93.1.0 |Heme-dependent peroxidases |Heme-dependent peroxidases |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d1xdoa3 : (LYS326) (THR349) [view usage] : d.136.1.4 |Phospholipase D/nuclease |Phospholipase D/nuclease |Polyphosphate kinase C-terminal domain |Polyphosphate kinase, PPK |Escherichia coli [TaxId: 562]
d4a8oa_ : (ILE294) (TRP332) [view usage] : e.8.1.6 |DNA/RNA polymerases |DNA/RNA polymerases |dsRNA phage RNA-dependent RNA-polymerase |dsRNA phage RNA-dependent RNA-polymerase |Bacteriophage PHI-6 [TaxId: 10879]
d4a8oa_ : (THR633) (VAL661) [view usage] : e.8.1.6 |DNA/RNA polymerases |DNA/RNA polymerases |dsRNA phage RNA-dependent RNA-polymerase |dsRNA phage RNA-dependent RNA-polymerase |Bacteriophage PHI-6 [TaxId: 10879]
d1hhsa_ : (THR633) (VAL661) [view usage] : e.8.1.6 |DNA/RNA polymerases |DNA/RNA polymerases |dsRNA phage RNA-dependent RNA-polymerase |dsRNA phage RNA-dependent RNA-polymerase |Bacteriophage PHI-6 [TaxId: 10879]
d2boaa2 : (PRO57) (GLN99) [view usage] : d.58.3.1 |Ferredoxin-like |Protease propeptides/inhibitors |Pancreatic carboxypeptidase, activation domain |Procarboxypeptidase A |Human (Homo sapiens) [TaxId: 9606]
d1iq8a1 : (GLU71) (LYS103) [view usage] : c.1.20.1 |TIM beta/alpha-barrel |tRNA-guanine transglycosylase |tRNA-guanine transglycosylase |Archaeosine tRNA-guanine transglycosylase, N-terminal domain |Pyrococcus horikoshii [TaxId: 53953]
d2jlga_ : (ILE294) (TRP332) [view usage] : e.8.1.6 |DNA/RNA polymerases |DNA/RNA polymerases |dsRNA phage RNA-dependent RNA-polymerase |dsRNA phage RNA-dependent RNA-polymerase |Bacteriophage PHI-6 [TaxId: 10879]
d2jlga_ : (THR633) (VAL661) [view usage] : e.8.1.6 |DNA/RNA polymerases |DNA/RNA polymerases |dsRNA phage RNA-dependent RNA-polymerase |dsRNA phage RNA-dependent RNA-polymerase |Bacteriophage PHI-6 [TaxId: 10879]
d3d63a_ : (CYS115) (LYS175) [view usage] : b.40.5.1 |OB-fold |Inorganic pyrophosphatase |Inorganic pyrophosphatase |automated matches |Burkholderia pseudomallei [TaxId: 320372]
d3j39f_ : (CYS190) (MET251) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Drosophila melanogaster [TaxId: 7227]
d1v7pc_ : (SER257) (ALA290) [view usage] : c.62.1.1 |vWA-like |vWA-like |Integrin A (or I) domain |Integrin alpha2-beta1 |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, c.1, c.6, d.58, i.1, c.79, a.93, b.40, c.47, c.55, a.86, c.62, b.1, d.126, a.25, c.61, a.4, d.136, b.127