Tableau information
Concept source: d4d9eb_ amino acid (a.a.) range (LYS51)(LEU91)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HHEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(LYS51) (GLU56) H1
(PHE57) (GLY66) H2
(ASP68) (GLY74) E3
(ASN79) (LEU91) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -32.5° H2
E3 147.7° 143.1° E3
H4 -42.3° -42.1° -170.1°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2hsab_ : (GLY156) (LEU196) [view usage] : c.1.4.1 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |FMN-linked oxidoreductases |automated matches |Solanum lycopersicum [TaxId: 4081]
d1ep3a_ : (GLY80) (ALA123) [view usage] : c.1.4.1 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |FMN-linked oxidoreductases |Dihydroorotate dehydrogenase |Lactococcus lactis, isozyme B [TaxId: 1358]
d1g8xa_ : (GLN137) (GLY201) [view usage] : k.1.1.1 |Hybrid and chimeric proteins |Hybrid and chimeric proteins |Hybrid and chimeric proteins |Genetically engineered molecular motor |Slime mold (Dictyostelium discoideum) [TaxId: 44689]
d3u7ra_ : (ASN47) (ARG95) [view usage] : c.23.5.0 |Flavodoxin-like |Flavoproteins |automated matches |automated matches |Paracoccus denitrificans [TaxId: 318586]
d1euqa2 : (THR292) (ASN338) [view usage] : c.26.1.1 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Class I aminoacyl-tRNA synthetases (RS), catalytic domain |Glutaminyl-tRNA synthetase (GlnRS) |Escherichia coli [TaxId: 562]
d1hq0a_ : (PHE891) (GLN949) [view usage] : d.194.1.1 |CNF1/YfiH-like putative cysteine hydrolases |CNF1/YfiH-like putative cysteine hydrolases |Type 1 cytotoxic necrotizing factor, catalytic domain |Type 1 cytotoxic necrotizing factor, catalytic domain |Escherichia coli [TaxId: 562]
d1cvia_ : (ARG1225) (ASP1269) [view usage] : c.60.1.2 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |Histidine acid phosphatase |Prostatic acid phosphatase |Human (Homo sapiens) [TaxId: 9606]
d4lfka_ : (GLU86) (ASP123) [view usage] : c.121.1.0 |Ribose/Galactose isomerase RpiB/AlsB |Ribose/Galactose isomerase RpiB/AlsB |automated matches |automated matches |Lactobacillus rhamnosus [TaxId: 568704]
d2zwib_ : (GLU164) (ILE227) [view usage] : c.87.1.0 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |automated matches |automated matches |Photobacterium phosphoreum [TaxId: 659]
d4lw2c_ : (GLY89) (THR133) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d2im5a2 : (ASP140) (TYR186) [view usage] : c.1.17.2 |TIM beta/alpha-barrel |Nicotinate/Quinolinate PRTase C-terminal domain-like |Monomeric nicotinate phosphoribosyltransferase C-terminal domain |Nicotinate phosphoribosyltransferase, C-terminal domain |Porphyromonas gingivalis [TaxId: 837]
d1lj8a4 : (PRO150) (ASN211) [view usage] : c.2.1.6 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |6-phosphogluconate dehydrogenase-like, N-terminal domain |Mannitol 2-dehydrogenase |Pseudomonas fluorescens [TaxId: 294]
d1kfia2 : (VAL206) (GLY255) [view usage] : c.84.1.1 |Phosphoglucomutase, first 3 domains |Phosphoglucomutase, first 3 domains |Phosphoglucomutase, first 3 domains |Exocytosis-sensitive phosphoprotein, pp63/parafusin |Ciliate (Paramecium tetraurelia) [TaxId: 5888]
d1i60a_ : (ASP75) (ALA132) [view usage] : c.1.15.4 |TIM beta/alpha-barrel |Xylose isomerase-like |IolI-like |Hypothetical protein IolI |Bacillus subtilis [TaxId: 1423]
d1m9ha_ : (PRO25) (SER63) [view usage] : c.1.7.1 |TIM beta/alpha-barrel |NAD(P)-linked oxidoreductase |Aldo-keto reductases (NADP) |2,5-diketo-D-gluconic acid reductase A |Corynebacterium sp. [TaxId: 1720]
d3fw1a_ : (GLY68) (CYS121) [view usage] : c.23.5.3 |Flavodoxin-like |Flavoproteins |Quinone reductase |Quinone reductase type 2 (menadione reductase) |Human (Homo sapiens) [TaxId: 9606]
d1ui1a_ : (LEU93) (PHE128) [view usage] : c.18.1.2 |Uracil-DNA glycosylase-like |Uracil-DNA glycosylase-like |Mug-like |Thermophilic uracil-DNA glycosylase |Thermus thermophilus [TaxId: 274]
d4dq8b2 : (ASP271) (LEU332) [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Mycobacterium marinum [TaxId: 216594]
d1h4pa_ : (ASP377) (GLY428) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Exo-beta-(1,3)-glucanase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1ui0a_ : (LEU93) (PHE128) [view usage] : c.18.1.2 |Uracil-DNA glycosylase-like |Uracil-DNA glycosylase-like |Mug-like |Thermophilic uracil-DNA glycosylase |Thermus thermophilus [TaxId: 274]
d1qrsa2 : (THR292) (ASN338) [view usage] : c.26.1.1 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Class I aminoacyl-tRNA synthetases (RS), catalytic domain |Glutaminyl-tRNA synthetase (GlnRS) |Escherichia coli [TaxId: 562]
d1v93a_ : (VAL251) (GLY288) [view usage] : c.1.23.1 |TIM beta/alpha-barrel |FAD-linked oxidoreductase |Methylenetetrahydrofolate reductase |Methylenetetrahydrofolate reductase |Thermus thermophilus [TaxId: 274]
d4jcma1 : (LEU227) (SER266) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Bacillus clarkii [TaxId: 79879]
d1vk2a_ : (THR98) (ASP134) [view usage] : c.18.1.2 |Uracil-DNA glycosylase-like |Uracil-DNA glycosylase-like |Mug-like |Thermophilic uracil-DNA glycosylase |Thermotoga maritima [TaxId: 2336]
d1l9ga_ : (THR98) (ASP134) [view usage] : c.18.1.2 |Uracil-DNA glycosylase-like |Uracil-DNA glycosylase-like |Mug-like |Thermophilic uracil-DNA glycosylase |Thermotoga maritima [TaxId: 2336]
d1a0ca_ : (ILE314) (ARG385) [view usage] : c.1.15.3 |TIM beta/alpha-barrel |Xylose isomerase-like |Xylose isomerase |D-xylose isomerase |Clostridium thermosulfurogenes, also known as Thermoanaerobacter thermosulfurigenes [TaxId: 33950]
d3ppha1 : (VAL280) (VAL326) [view usage] : c.1.22.0 |TIM beta/alpha-barrel |UROD/MetE-like |automated matches |automated matches |Yeast (Candida albicans) [TaxId: 5476]
d2yvta1 : (LYS65) (GLU114) [view usage] : d.159.1.6 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |TT1561-like |Uncharacterized protein Aq_1956 |Aquifex aeolicus [TaxId: 63363]
d2biba2 : (ASP231) (GLY274) [view usage] : d.157.1.8 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |Pce catalytic domain-like |Teichoic acid phosphorylcholine esterase Pce (LytD), N-terminal domain |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d4dq8a2 : (ASP271) (LEU332) [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Mycobacterium marinum [TaxId: 216594]
d1j93a_ : (ASP296) (LEU350) [view usage] : c.1.22.1 |TIM beta/alpha-barrel |UROD/MetE-like |Uroporphyrinogen decarboxylase, UROD |Uroporphyrinogen decarboxylase, UROD |Tobacco (Nicotiana tabacum), UROD-III [TaxId: 4097]
d1r57a_ : (GLY51) (GLU85) [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |Hypothetical protein SA2309 |Staphylococcus aureus [TaxId: 1280]
d1cl6a_ : (THR106) (GLY158) [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450-NOR, nitric reductase |Fungus (Fusarium oxysporum) [TaxId: 5507]
d3u5ck_ : (LYS5) (GLY53) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Saccharomyces cerevisiae [TaxId: 559292]
d1z6ka_ : (VAL188) (ARG222) [view usage] : c.1.12.5 |TIM beta/alpha-barrel |Phosphoenolpyruvate/pyruvate domain |HpcH/HpaI aldolase |Citrate lyase, beta subunit |Mycobacterium tuberculosis [TaxId: 1773]
d1edza1 : (THR151) (GLY201) [view usage] : c.2.1.7 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Aminoacid dehydrogenase-like, C-terminal domain |Methylenetetrahydrofolate dehydrogenase/cyclohydrolase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2fcaa1 : (LYS122) (GLY170) [view usage] : c.66.1.53 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |TrmB-like |tRNA (guanine-N(7)-)-methyltransferase TrmB |Bacillus subtilis [TaxId: 1423]
d1qrua2 : (THR292) (ASN338) [view usage] : c.26.1.1 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Class I aminoacyl-tRNA synthetases (RS), catalytic domain |Glutaminyl-tRNA synthetase (GlnRS) |Escherichia coli [TaxId: 562]
d2zl3a_ : (VAL71) (CYS107) [view usage] : c.14.1.1 |ClpP/crotonase |ClpP/crotonase |Clp protease, ClpP subunit |Clp protease, ClpP subunit |Helicobacter pylori [TaxId: 210]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.67, a.104, c.2, d.159, i.1, c.79, c.26, d.157, c.66, c.14, c.23, c.18, c.55, d.194, c.87, c.60, d.108, c.121, c.84,
k.1