Tableau information
Concept source: d4juca1 amino acid (a.a.) range (SER131)(LYS165)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HHEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(SER131) (VAL135) H1
(VAL135) (MET148) H2
(VAL154) (PRO159) E3
(PRO159) (LYS165) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -45.5° H2
E3 -132.7° -163.5° E3
H4 -74.1° -109.6° 81.9°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1v5fa2 : (TYR137) (VAL170) [view usage] : c.36.1.0 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |automated matches |automated matches |Aerococcus viridans [TaxId: 1377]
d1n4ob_ : (ALA106) (THR129) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |beta-Lactamase, class A |Stenotrophomonas maltophilia, L2 [TaxId: 40324]
d2dzda1 : (TYR87) (ASP120) [view usage] : c.30.1.0 |PreATP-grasp domain |PreATP-grasp domain |automated matches |automated matches |Geobacillus thermodenitrificans [TaxId: 33940]
d3tbfa_ : (ARG475) (LEU505) [view usage] : c.80.1.1 |SIS domain |SIS domain |double-SIS domain |automated matches |Francisella tularensis [TaxId: 119856]
d3ouua1 : (GLY84) (MSE114) [view usage] : c.30.1.0 |PreATP-grasp domain |PreATP-grasp domain |automated matches |automated matches |Campylobacter jejuni [TaxId: 192222]
d3s6oc_ : (ASN220) (ARG269) [view usage] : c.6.2.6 |7-stranded beta/alpha barrel |Glycoside hydrolase/deacetylase |PA1517-like |automated matches |Burkholderia pseudomallei [TaxId: 28450]
d3fj1c_ : (ARG212) (HIS244) [view usage] : c.80.1.0 |SIS domain |SIS domain |automated matches |automated matches |Silicibacter pomeroyi [TaxId: 246200]
d1v5ea2 : (TYR137) (VAL170) [view usage] : c.36.1.5 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |Pyruvate oxidase and decarboxylase Pyr module |Pyruvate oxidase |Aerococcus viridans [TaxId: 1377]
d1w93a2 : (PRO100) (ASN130) [view usage] : c.30.1.1 |PreATP-grasp domain |PreATP-grasp domain |BC N-terminal domain-like |Acetyl-CoA carboxylase, BC-N subdomain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1kd0a1 : (THR364) (LYS413) [view usage] : c.1.11.2 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |D-glucarate dehydratase-like |beta-Methylaspartase |Clostridium tetanomorphum [TaxId: 1553]
d1j2ta_ : (HIS120) (LYS158) [view usage] : c.125.1.1 |Creatininase |Creatininase |Creatininase |Creatininase |Pseudomonas putida [TaxId: 303]
d1poxa2 : (ASN142) (GLN175) [view usage] : c.36.1.5 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |Pyruvate oxidase and decarboxylase Pyr module |Pyruvate oxidase |Lactobacillus plantarum [TaxId: 1590]
d1gdta2 : (LYS65) (GLY137) [view usage] : c.53.1.1 |Resolvase-like |Resolvase-like |gamma,delta resolvase, catalytic domain |gamma,delta resolvase, catalytic domain |Escherichia coli [TaxId: 562]
d1powa2 : (ASN142) (GLN175) [view usage] : c.36.1.5 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |Pyruvate oxidase and decarboxylase Pyr module |Pyruvate oxidase |Lactobacillus plantarum [TaxId: 1590]
d4mx6a_ : (PRO201) (LYS228) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Shewanella oneidensis [TaxId: 211586]
d4juba1 : (SER131) (LYS165) [view usage] : c.36.1.0 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |automated matches |automated matches |Pseudomonas putida [TaxId: 303]
d4l75a1 : (ARG213) (SER242) [view usage] : c.2.1.9 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Potassium channel NAD-binding domain |automated matches |Methanothermobacter thermautotrophicus [TaxId: 187420]
d2czvb_ : (PRO64) (GLY96) [view usage] : c.6.3.2 |7-stranded beta/alpha barrel |PHP domain-like |RNase P subunit p30 |Ribonuclease P protein component 3, Rnp3 |Pyrococcus horikoshii [TaxId: 53953]
d4pgpb_ : (GLY78) (PRO102) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Desulfovibrio desulfuricans [TaxId: 207559]
d1jfla1 : (CYS82) (GLY115) [view usage] : c.78.2.1 |ATC-like |Aspartate/glutamate racemase |Aspartate/glutamate racemase |Aspartate racemase |Pyrococcus horikoshii OT3 [TaxId: 70601]
d4p47a_ : (PRO195) (LYS222) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Ochrobactrum anthropi [TaxId: 439375]
d2o8rb3 : (SER325) (SER365) [view usage] : d.136.1.4 |Phospholipase D/nuclease |Phospholipase D/nuclease |Polyphosphate kinase C-terminal domain |Polyphosphate kinase, PPK |Porphyromonas gingivalis [TaxId: 837]
d2fy8a1 : (ARG213) (ILE243) [view usage] : c.2.1.9 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Potassium channel NAD-binding domain |Potassium channel-related protein MthK |Methanothermobacter thermautotrophicus [TaxId: 145262]
d1y9db3 : (THR421) (THR453) [view usage] : c.36.1.0 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |automated matches |automated matches |Lactobacillus plantarum [TaxId: 1590]
d4juca1 : (SER131) (LYS165) [view usage] : c.36.1.0 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |automated matches |automated matches |Pseudomonas putida [TaxId: 303]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.3, c.1, c.94, c.2, c.6, c.80, c.36, c.78, c.53, c.125, c.30, d.136