Tableau information
Concept source: d4ok9a_ amino acid (a.a.) range (ASP20)(GLU63)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HHEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASP20) (GLY25) H1
(GLY25) (ASN35) H2
(TRP36) (ALA45) E3
(GLN49) (GLU63) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -44.7° H2
E3 171.1° 137.8° E3
H4 -39.5° -51.2° 149.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1q8ga_ : (PRO110) (GLU151) [view usage] : d.109.1.2 |Gelsolin-like |Actin depolymerizing proteins |Cofilin-like |Cofilin (actin depolymerizing factor, ADF) |Human (Homo sapiens), non-muscle isoform [TaxId: 9606]
d3tr4f_ : (SER126) (GLU173) [view usage] : b.40.5.0 |OB-fold |Inorganic pyrophosphatase |automated matches |automated matches |Coxiella burnetii [TaxId: 227377]
d4hwka_ : (ASN40) (LEU83) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Sepiapterin reductase |Human (Homo sapiens) [TaxId: 9606]
d3p8ta_ : (LYS125) (GLU168) [view usage] : d.104.1.1 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain |automated matches |Pyrococcus abyssi [TaxId: 29292]
d1wf3a1 : (ALA130) (MET171) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |GTPase Era, N-terminal domain |Thermus thermophilus [TaxId: 274]
d1vs6f1 : (ALA1) (ILE59) [view usage] : d.77.1.1 |RL5-like |RL5-like |Ribosomal protein L5 |Ribosomal protein L5 |Escherichia coli [TaxId: 562]
d4gu7a_ : (PRO267) (ASP311) [view usage] : d.58.4.0 |Ferredoxin-like |Dimeric alpha+beta barrel |automated matches |automated matches |Streptomyces coelicolor [TaxId: 100226]
d3b12a_ : (GLU250) (SER294) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Burkholderia sp. [TaxId: 36773]
d1vw4e_ : (PHE246) (GLN284) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, mitochondrial (54S or 39S subunit) |Saccharomyces cerevisiae [TaxId: 4932]
d3u74u3 : (THR243) (HIS273) [view usage] : g.7.1.0 |Snake toxin-like |Snake toxin-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2dsta1 : (GLY88) (TYR122) [view usage] : c.69.1.39 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |TTHA1544-like |Hypothetical protein TTHA1544 |Thermus thermophilus [TaxId: 274]
d3bboh1 : (LEU19) (GLY77) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, chloroplast (70S ribosome functional complex) |Spinach (Spinacia oleracea) [TaxId: 3562]
d3a10a_ : (TYR82) (SER116) [view usage] : c.23.1.0 |Flavodoxin-like |CheY-like |automated matches |automated matches |Thermotoga maritima [TaxId: 2336]
d3oifa_ : (PRO224) (ARG258) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Enoyl-ACP reductase |Bacillus subtilis [TaxId: 1423]
d4ne4a_ : (SER152) (GLN190) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Agrobacterium fabrum [TaxId: 176299]
d3qgma_ : (THR234) (ALA262) [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Archaeoglobus fulgidus [TaxId: 2234]
d3s55d_ : (PRO244) (MET277) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Mycobacterium abscessus [TaxId: 561007]
d4lzla_ : (TRP83) (GLY120) [view usage] : c.23.1.0 |Flavodoxin-like |CheY-like |automated matches |automated matches |Streptococcus pneumoniae [TaxId: 914130]
d2jk1a_ : (THR83) (LEU140) [view usage] : c.23.1.0 |Flavodoxin-like |CheY-like |automated matches |automated matches |Rhodobacter capsulatus [TaxId: 1061]
d4ee9a_ : (TRP177) (VAL227) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Uncultured bacterium [TaxId: 77133]
d1u1ia2 : (GLU230) (LEU265) [view usage] : d.81.1.3 |FwdE/GAPDH domain-like |Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain |Dihydrodipicolinate reductase-like |Myo-inositol 1-phosphate synthase |Archaeoglobus fulgidus [TaxId: 2234]
d2a7sa1 : (GLY237) (LEU269) [view usage] : c.14.1.4 |ClpP/crotonase |ClpP/crotonase |Biotin dependent carboxylase carboxyltransferase domain |Propionyl-CoA carboxylase complex B subunit, PccB |Mycobacterium tuberculosis [TaxId: 1773]
d1ywhe3 : (ALA244) (HIS273) [view usage] : g.7.1.3 |Snake toxin-like |Snake toxin-like |Extracellular domain of cell surface receptors |Urokinase plasminogen activator surface receptor uPAR |Human (Homo sapiens) [TaxId: 9606]
d3a0ua_ : (TYR82) (LEU115) [view usage] : c.23.1.0 |Flavodoxin-like |CheY-like |automated matches |automated matches |Thermotoga maritima [TaxId: 2336]
d1wf3a2 : (PRO239) (GLY295) [view usage] : d.52.3.1 |Alpha-lytic protease prodomain-like |Prokaryotic type KH domain (KH-domain type II) |Prokaryotic type KH domain (KH-domain type II) |GTPase Era C-terminal domain |Thermus thermophilus [TaxId: 274]
d4lrlc_ : (ASN336) (PRO371) [view usage] : a.211.1.1 |HD-domain/PDEase-like |HD-domain/PDEase-like |HD domain |Hypothetical protein EF1143 |Enterococcus faecalis [TaxId: 1351]
d2lsna_ : (SER84) (VAL164) [view usage] : c.55.3.1 |Ribonuclease H-like motif |Ribonuclease H-like |Ribonuclease H |RNase H (RNase HI) |Human spumaretrovirus [TaxId: 11963]
d2pbla1 : (LYS78) (ARG107) [view usage] : c.69.1.2 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Carboxylesterase |Uncharacterized protein TM1040_2492 |Silicibacter sp. tm1040 [TaxId: 292414]
d2ch6a2 : (GLY84) (ALA115) [view usage] : c.55.1.5 |Ribonuclease H-like motif |Actin-like ATPase domain |BadF/BadG/BcrA/BcrD-like |N-acetylglucosamine kinase, NAGK |Human (Homo sapiens) [TaxId: 9606]
d1vr3a1 : (LYS45) (GLU86) [view usage] : b.82.1.6 |Double-stranded beta-helix |RmlC-like cupins |Acireductone dioxygenase |Acireductone dioxygenase |Mouse (Mus musculus) [TaxId: 10090]
d3phga1 : (LYS17) (GLY58) [view usage] : c.58.1.0 |Aminoacid dehydrogenase-like, N-terminal domain |Aminoacid dehydrogenase-like, N-terminal domain |automated matches |automated matches |Helicobacter pylori [TaxId: 85962]
d4hnra_ : (SER86) (LEU119) [view usage] : c.23.1.0 |Flavodoxin-like |CheY-like |automated matches |automated matches |Vibrio cholerae [TaxId: 345073]
d1aq0a_ : (ASN252) (TRP291) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Plant beta-glucanases |Barley (Hordeum vulgare), 1,3-1,4-beta-glucanase [TaxId: 4513]
d3c49a2 : (GLU366) (THR396) [view usage] : d.166.1.0 |ADP-ribosylation |ADP-ribosylation |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1n8pa_ : (ASP126) (LEU152) [view usage] : c.67.1.3 |PLP-dependent transferase-like |PLP-dependent transferases |Cystathionine synthase-like |Cystathionine gamma-lyase (CYS3) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2mp4a_ : (SER115) (TYR162) [view usage] : d.109.1.0 |Gelsolin-like |Actin depolymerizing proteins |automated matches |automated matches |Nematode (Caenorhabditis elegans) [TaxId: 6239]
d1xkra_ : (ASP103) (GLU156) [view usage] : d.252.1.1 |CheC-like |CheC-like |CheC-like |Chemotaxis protein CheC |Thermotoga maritima [TaxId: 2336]
d1evya2 : (ASN47) (ASN84) [view usage] : c.2.1.6 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |6-phosphogluconate dehydrogenase-like, N-terminal domain |Glycerol-3- phosphate dehydrogenase |Trypanosome (Leishmania mexicana) [TaxId: 5665]
d4ffda_ : (LYS205) (ASN230) [view usage] : c.108.1.1 |HAD-like |HAD-like |HAD-related |automated matches |Pyrococcus horikoshii [TaxId: 53953]
d3bt1u2 : (THR243) (PRO274) [view usage] : g.7.1.3 |Snake toxin-like |Snake toxin-like |Extracellular domain of cell surface receptors |Urokinase plasminogen activator surface receptor uPAR |Human (Homo sapiens) [TaxId: 9606]
d4ok9a_ : (ASP20) (GLU63) [view usage] : d.275.1.1 |Hut operon positive regulatory protein HutP |Hut operon positive regulatory protein HutP |Hut operon positive regulatory protein HutP |automated matches |Geobacillus thermodenitrificans [TaxId: 420246]
d4uyba2 : (PHE198) (LYS230) [view usage] : c.13.1.0 |SpoIIaa-like |CRAL/TRIO domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, b.82, c.67, c.69, c.94, c.2, d.58, i.1, c.108, c.14, a.211, c.23, b.40, c.37, d.104, c.55, d.166, d.81, c.13, d.109,
c.58, d.52, g.7, d.77, d.252, d.275