Tableau information
Concept source: d3oojg1 amino acid (a.a.) range (GLU125)(SER174)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HHEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLU125) (LEU135) H1
(ARG142) (ARG153) H2
(TYR156) (ASP162) E3
(ASP167) (SER174) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 135.6° H2
E3 -46.8° 150.2° E3
E4 122.5° -23.1° 162.7°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±10.9° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1g8xa_ : (PRO82) (ASN127) [view usage] : k.1.1.1 |Hybrid and chimeric proteins |Hybrid and chimeric proteins |Hybrid and chimeric proteins |Genetically engineered molecular motor |Slime mold (Dictyostelium discoideum) [TaxId: 44689]
d1vs6i2 : (LEU27) (THR72) [view usage] : d.47.1.1 |Ribosomal L11/L12e N-terminal domain |Ribosomal L11/L12e N-terminal domain |Ribosomal L11/L12e N-terminal domain |Ribosomal protein L11, N-terminal domain |Escherichia coli [TaxId: 562]
d3u0gf_ : (ARG55) (ALA130) [view usage] : e.17.1.0 |D-aminoacid aminotransferase-like PLP-dependent enzymes |D-aminoacid aminotransferase-like PLP-dependent enzymes |automated matches |automated matches |Burkholderia pseudomallei [TaxId: 28450]
d2w27a2 : (LYS263) (GLN329) [view usage] : d.110.6.2 |Profilin-like |Sensory domain-like |YkuI C-terminal domain-like |Hypothetical protein YkuI, C-terminal domain |Bacillus subtilis [TaxId: 1423]
d1f98a_ : (ILE11) (ALA44) [view usage] : d.110.3.1 |Profilin-like |PYP-like sensor domain (PAS domain) |PYP-like |Photoactive yellow protein, PYP |Methylophilus methylotrophus, strain w3a1 [TaxId: 17]
d1sqlb_ : (TYR53) (ARG120) [view usage] : d.96.1.3 |T-fold |Tetrahydrobiopterin biosynthesis enzymes-like |DHN aldolase/epimerase |7,8-dihydroneopterin aldolase |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1irya_ : (PRO112) (GLU152) [view usage] : d.113.1.1 |Nudix |Nudix |MutT-like |7,8-dihydro-8-oxoguanine triphosphatase Hmth1 |Human (Homo sapiens) [TaxId: 9606]
d1olza3 : (PHE481) (SER526) [view usage] : g.16.2.1 |Trefoil/Plexin domain-like |Plexin repeat |Plexin repeat |Semaphorin 4d |Human (Homo sapiens) [TaxId: 9606]
d3ujma_ : (SER15) (GLY55) [view usage] : d.17.4.0 |Cystatin-like |NTF2-like |automated matches |automated matches |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1dhna_ : (TYR54) (GLU119) [view usage] : d.96.1.3 |T-fold |Tetrahydrobiopterin biosynthesis enzymes-like |DHN aldolase/epimerase |7,8-dihydroneopterin aldolase |Staphylococcus aureus [TaxId: 1280]
d1gpma3 : (PRO406) (VAL457) [view usage] : d.52.2.1 |Alpha-lytic protease prodomain-like |GMP synthetase C-terminal dimerisation domain |GMP synthetase C-terminal dimerisation domain |GMP synthetase C-terminal dimerisation domain |Escherichia coli [TaxId: 562]
d1sqlc_ : (TYR53) (ARG118) [view usage] : d.96.1.3 |T-fold |Tetrahydrobiopterin biosynthesis enzymes-like |DHN aldolase/epimerase |7,8-dihydroneopterin aldolase |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d2i4sb_ : (GLY-3) (PRO243) [view usage] : b.36.1.5 |PDZ domain-like |PDZ domain-like |EpsC C-terminal domain-like |General secretion pathway protein C, EpsC |Vibrio cholerae [TaxId: 666]
d2z9ob2 : (PRO195) (THR246) [view usage] : a.4.5.10 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Replication initiation protein |RepE54 |Escherichia coli, mini-F plasmid [TaxId: 562]
d1gsxa_ : (ASP10) (ALA44) [view usage] : d.110.3.1 |Profilin-like |PYP-like sensor domain (PAS domain) |PYP-like |Photoactive yellow protein, PYP |Methylophilus methylotrophus, strain w3a1 [TaxId: 17]
d3j38d_ : (ALA100) (ASP156) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Drosophila melanogaster [TaxId: 7227]
d3u5cd_ : (SER97) (GLY155) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Saccharomyces cerevisiae [TaxId: 559292]
d2basb2 : (LYS263) (ASP330) [view usage] : d.110.6.2 |Profilin-like |Sensory domain-like |YkuI C-terminal domain-like |Hypothetical protein YkuI, C-terminal domain |Bacillus subtilis [TaxId: 1423]
d2dika3 : (PRO290) (ASN338) [view usage] : d.142.1.5 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |Pyruvate phosphate dikinase, N-terminal domain |Pyruvate phosphate dikinase, N-terminal domain |Clostridium symbiosum [TaxId: 1512]
d1z7qk1 : (PHE56) (ASP120) [view usage] : d.153.1.4 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Proteasome subunits |Proteasome beta subunit (catalytic) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1te5a_ : (ASP129) (CYS185) [view usage] : d.153.1.1 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Class II glutamine amidotransferases |Hypothetical protein YafJ (PA1307) |Pseudomonas aeruginosa [TaxId: 287]
d2w27b2 : (LYS263) (GLN329) [view usage] : d.110.6.2 |Profilin-like |Sensory domain-like |YkuI C-terminal domain-like |Hypothetical protein YkuI, C-terminal domain |Bacillus subtilis [TaxId: 1423]
d1sqlj_ : (TYR53) (ARG118) [view usage] : d.96.1.3 |T-fold |Tetrahydrobiopterin biosynthesis enzymes-like |DHN aldolase/epimerase |7,8-dihydroneopterin aldolase |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1repc2 : (PRO195) (THR246) [view usage] : a.4.5.10 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Replication initiation protein |RepE54 |Escherichia coli, mini-F plasmid [TaxId: 562]
d2basa2 : (LYS263) (LYS328) [view usage] : d.110.6.2 |Profilin-like |Sensory domain-like |YkuI C-terminal domain-like |Hypothetical protein YkuI, C-terminal domain |Bacillus subtilis [TaxId: 1423]
d3izbb_ : (VAL99) (GLY155) [view usage] : i.1.1.3 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Small subunit |Eukaryotic, cytoplasmic (40S subunit) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2xzmc_ : (CYS100) (GLY158) [view usage] : i.1.1.3 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Small subunit |Eukaryotic, cytoplasmic (40S subunit) |Tetrahymena thermophila [TaxId: 5911]
d2oc6b_ : (SER5) (HIS48) [view usage] : d.198.4.1 |Secretion chaperone-like |YdhG-like |YdhG-like |Uncharacterized protein YdhG |Bacillus subtilis [TaxId: 1423]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
i.1, d.153, d.96, e.17, d.110, d.17, d.142, a.4, d.113, b.36, d.52, d.198, d.47, k.1, g.16