Tableau information
Concept source: d1nbua_ amino acid (a.a.) range (TYR54)(ARG119)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HHEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(TYR54) (GLY67) H1
(ILE73) (ASP86) H2
(HIS91) (GLN101) E3
(ASP109) (ARG119) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 148.2° H2
E3 -45.9° 152.0° E3
E4 119.0° -35.1° 162.3°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±12.4° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1ueka1 : (LEU115) (ALA148) [view usage] : d.14.1.5 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |GHMP Kinase, N-terminal domain |4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE |Thermus thermophilus [TaxId: 274]
d1h0ma2 : (TRP4) (VAL50) [view usage] : d.110.5.1 |Profilin-like |Pheromone-binding domain of LuxR-like quorum-sensing transcription factors |Pheromone-binding domain of LuxR-like quorum-sensing transcription factors |Transcription factor TraR, N-terminal domain |Agrobacterium tumefaciens [TaxId: 358]
d1qhba_ : (ILE543) (ILE596) [view usage] : a.111.1.2 |Acid phosphatase/Vanadium-dependent haloperoxidase |Acid phosphatase/Vanadium-dependent haloperoxidase |Haloperoxidase (bromoperoxidase) |Haloperoxidase (bromoperoxidase) |Red algae (Corallina officinalis) [TaxId: 35170]
d1f2oa_ : (LEU6) (TRP71) [view usage] : c.56.5.4 |Phosphorylase/hydrolase-like |Zn-dependent exopeptidases |Bacterial dinuclear zinc exopeptidases |Aminopeptidase |Streptomyces griseus [TaxId: 1911]
d1visa1 : (LYS132) (GLY177) [view usage] : d.14.1.5 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |GHMP Kinase, N-terminal domain |Mevalonate kinase |Methanococcus jannaschii [TaxId: 2190]
d2g64a1 : (VAL91) (LYS138) [view usage] : d.96.1.2 |T-fold |Tetrahydrobiopterin biosynthesis enzymes-like |6-pyruvoyl tetrahydropterin synthase |6-pyruvoyl tetrahydropterin synthase |Nematode (Caenorhabditis elegans) [TaxId: 6239]
d1nbub_ : (TYR54) (SER118) [view usage] : d.96.1.3 |T-fold |Tetrahydrobiopterin biosynthesis enzymes-like |DHN aldolase/epimerase |7,8-dihydroneopterin aldolase |Mycobacterium tuberculosis [TaxId: 1773]
d1piea1 : (PRO159) (PRO209) [view usage] : d.14.1.5 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |GHMP Kinase, N-terminal domain |Galactokinase |Lactococcus lactis [TaxId: 1358]
d1s4ef1 : (ASP127) (PRO177) [view usage] : d.14.1.5 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |GHMP Kinase, N-terminal domain |Galactokinase |Pyrococcus furiosus [TaxId: 2261]
d3i2bg_ : (VAL97) (GLY144) [view usage] : d.96.1.0 |T-fold |Tetrahydrobiopterin biosynthesis enzymes-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1rota_ : (ASP79) (GLU135) [view usage] : d.26.1.1 |FKBP-like |FKBP-like |FKBP immunophilin/proline isomerase |FKBP59-I, N-terminal domain |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
d3c2wa1 : (SER122) (ARG179) [view usage] : d.110.2.1 |Profilin-like |GAF domain-like |GAF domain |Bacteriophytochrome BphP |Pseudomonas aeruginosa [TaxId: 287]
d1ee0b2 : (ALA331) (VAL394) [view usage] : c.95.1.2 |Thiolase-like |Thiolase-like |Chalcone synthase-like |Pyrone synthase (PyS, chalcone synthase 2) |Gerbera hybrid cultivar [TaxId: 18101]
d1nbua_ : (TYR54) (ARG119) [view usage] : d.96.1.3 |T-fold |Tetrahydrobiopterin biosynthesis enzymes-like |DHN aldolase/epimerase |7,8-dihydroneopterin aldolase |Mycobacterium tuberculosis [TaxId: 1773]
d1q5fa_ : (LYS30) (SER93) [view usage] : d.24.1.1 |Pili subunits |Pili subunits |Pilin |Type IVb pilin PilS |Salmonella typhi [TaxId: 90370]
d1hcua_ : (GLY118) (SER171) [view usage] : a.102.2.1 |alpha/alpha toroid |Seven-hairpin glycosidases |Class I alpha-1;2-mannosidase, catalytic domain |Class I alpha-1;2-mannosidase, catalytic domain |Trichoderma reesei [TaxId: 51453]
d2z9oa2 : (PRO195) (ASP244) [view usage] : a.4.5.10 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Replication initiation protein |RepE54 |Escherichia coli, mini-F plasmid [TaxId: 562]
d3i2bc_ : (VAL97) (LYS143) [view usage] : d.96.1.0 |T-fold |Tetrahydrobiopterin biosynthesis enzymes-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1up8a_ : (ILE544) (ILE597) [view usage] : a.111.1.2 |Acid phosphatase/Vanadium-dependent haloperoxidase |Acid phosphatase/Vanadium-dependent haloperoxidase |Haloperoxidase (bromoperoxidase) |Haloperoxidase (bromoperoxidase) |Red algae (Corallina pilulifera) [TaxId: 78447]
d3i2ba_ : (VAL97) (LYS143) [view usage] : d.96.1.0 |T-fold |Tetrahydrobiopterin biosynthesis enzymes-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3spza2 : (GLN556) (SER628) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
d3lzia2 : (SER534) (SER628) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
d1sqlp_ : (TYR53) (ARG120) [view usage] : d.96.1.3 |T-fold |Tetrahydrobiopterin biosynthesis enzymes-like |DHN aldolase/epimerase |7,8-dihydroneopterin aldolase |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1vkja_ : (PHE229) (CYS269) [view usage] : c.37.1.5 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |PAPS sulfotransferase |Heparan sulfate 3-O-sulfotransferase |Mouse (Mus musculus) [TaxId: 10090]
d4e04a2 : (PHE133) (ARG187) [view usage] : d.110.2.0 |Profilin-like |GAF domain-like |automated matches |automated matches |Rhodopseudomonas palustris [TaxId: 258594]
d3r5ga_ : (PHE238) (GLY285) [view usage] : d.58.29.0 |Ferredoxin-like |Nucleotide cyclase |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d1g0u1_ : (MET133) (ASN189) [view usage] : d.153.1.4 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Proteasome subunits |Proteasome beta subunit (catalytic) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1b3qb3 : (VAL500) (ARG536) [view usage] : d.122.1.3 |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |Histidine kinase |Histidine kinase CheA |Thermotoga maritima [TaxId: 2336]
d1m5yb2 : (ARG235) (VAL270) [view usage] : d.26.1.1 |FKBP-like |FKBP-like |FKBP immunophilin/proline isomerase |Porin chaperone SurA, PPIase domains |Escherichia coli [TaxId: 562]
d1ftea_ : (THR1033) (ILE1115) [view usage] : d.150.1.2 |4'-phosphopantetheinyl transferase |4'-phosphopantetheinyl transferase |Holo-(acyl carrier protein) synthase ACPS |Holo-(acyl carrier protein) synthase ACPS |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d2cz9a1 : (ASP125) (PRO175) [view usage] : d.14.1.0 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |automated matches |automated matches |Pyrococcus horikoshii [TaxId: 53953]
d1h0mc2 : (TRP4) (VAL50) [view usage] : d.110.5.1 |Profilin-like |Pheromone-binding domain of LuxR-like quorum-sensing transcription factors |Pheromone-binding domain of LuxR-like quorum-sensing transcription factors |Transcription factor TraR, N-terminal domain |Agrobacterium tumefaciens [TaxId: 358]
d1nbuc_ : (TYR54) (SER118) [view usage] : d.96.1.3 |T-fold |Tetrahydrobiopterin biosynthesis enzymes-like |DHN aldolase/epimerase |7,8-dihydroneopterin aldolase |Mycobacterium tuberculosis [TaxId: 1773]
d1hdra_ : (THR186) (PHE243) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Dihydropteridin reductase (pteridine reductase) |Human (Homo sapiens) [TaxId: 9606]
d1m5yb3 : (THR345) (ASN385) [view usage] : d.26.1.1 |FKBP-like |FKBP-like |FKBP immunophilin/proline isomerase |Porin chaperone SurA, PPIase domains |Escherichia coli [TaxId: 562]
d1hcub_ : (GLY118) (SER171) [view usage] : a.102.2.1 |alpha/alpha toroid |Seven-hairpin glycosidases |Class I alpha-1;2-mannosidase, catalytic domain |Class I alpha-1;2-mannosidase, catalytic domain |Trichoderma reesei [TaxId: 51453]
d4b0na2 : (ALA353) (GLN413) [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Ectocarpus siliculosus [TaxId: 2880]
d1cqib2 : (PRO157) (ASP219) [view usage] : d.142.1.4 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |Succinyl-CoA synthetase, beta-chain, N-terminal domain |Succinyl-CoA synthetase, beta-chain, N-terminal domain |Escherichia coli [TaxId: 562]
d1m5ya3 : (THR345) (VAL386) [view usage] : d.26.1.1 |FKBP-like |FKBP-like |FKBP immunophilin/proline isomerase |Porin chaperone SurA, PPIase domains |Escherichia coli [TaxId: 562]
d1eyja_ : (THR63) (GLU106) [view usage] : e.7.1.1 |Carbohydrate phosphatase |Carbohydrate phosphatase |Inositol monophosphatase/fructose-1,6-bisphosphatase-like |Fructose-1,6-bisphosphatase |Pig (Sus scrofa) [TaxId: 9823]
d1vrga2 : (PRO267) (GLN316) [view usage] : c.14.1.4 |ClpP/crotonase |ClpP/crotonase |Biotin dependent carboxylase carboxyltransferase domain |Propionyl-CoA carboxylase complex B subunit, PccB |Thermotoga maritima [TaxId: 2336]
d3gmvx_ : (ALA6) (PHE44) [view usage] : d.98.1.0 |BLIP-like |beta-lactamase-inhibitor protein, BLIP |automated matches |automated matches |Streptomyces exfoliatus [TaxId: 1905]
d1b9la_ : (ASN56) (GLN119) [view usage] : d.96.1.3 |T-fold |Tetrahydrobiopterin biosynthesis enzymes-like |DHN aldolase/epimerase |7,8-dihydroneopterin triphosphate epimerase |Escherichia coli [TaxId: 562]
d1sqla_ : (TYR53) (ARG120) [view usage] : d.96.1.3 |T-fold |Tetrahydrobiopterin biosynthesis enzymes-like |DHN aldolase/epimerase |7,8-dihydroneopterin aldolase |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d4g4sj_ : (THR71) (ASP125) [view usage] : d.153.1.4 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Proteasome subunits |Proteasome beta subunit (catalytic) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4g4sj_ : (SER143) (TYR199) [view usage] : d.153.1.4 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Proteasome subunits |Proteasome beta subunit (catalytic) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1m5yc2 : (ARG235) (VAL270) [view usage] : d.26.1.1 |FKBP-like |FKBP-like |FKBP immunophilin/proline isomerase |Porin chaperone SurA, PPIase domains |Escherichia coli [TaxId: 562]
d1hcud_ : (GLY118) (SER171) [view usage] : a.102.2.1 |alpha/alpha toroid |Seven-hairpin glycosidases |Class I alpha-1;2-mannosidase, catalytic domain |Class I alpha-1;2-mannosidase, catalytic domain |Trichoderma reesei [TaxId: 51453]
d1wiba_ : (SER26) (VAL73) [view usage] : d.47.1.1 |Ribosomal L11/L12e N-terminal domain |Ribosomal L11/L12e N-terminal domain |Ribosomal L11/L12e N-terminal domain |60S ribosomal protein L12 |Mouse (Mus musculus) [TaxId: 10090]
d1jllb2 : (PRO157) (ALA218) [view usage] : d.142.1.4 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |Succinyl-CoA synthetase, beta-chain, N-terminal domain |Succinyl-CoA synthetase, beta-chain, N-terminal domain |Escherichia coli [TaxId: 562]
d1w25a3 : (PHE330) (PRO377) [view usage] : d.58.29.2 |Ferredoxin-like |Nucleotide cyclase |GGDEF domain |Response regulator PleD, C-terminal domain |Caulobacter crescentus [TaxId: 155892]
d1l3lc2 : (TRP4) (VAL50) [view usage] : d.110.5.1 |Profilin-like |Pheromone-binding domain of LuxR-like quorum-sensing transcription factors |Pheromone-binding domain of LuxR-like quorum-sensing transcription factors |Transcription factor TraR, N-terminal domain |Agrobacterium tumefaciens [TaxId: 358]
d2fp4b2 : (LYS163) (ASN224) [view usage] : d.142.1.4 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |Succinyl-CoA synthetase, beta-chain, N-terminal domain |Succinyl-CoA synthetase, beta-chain, N-terminal domain |Pig (Sus scrofa) [TaxId: 9823]
d1l3la2 : (TRP4) (VAL50) [view usage] : d.110.5.1 |Profilin-like |Pheromone-binding domain of LuxR-like quorum-sensing transcription factors |Pheromone-binding domain of LuxR-like quorum-sensing transcription factors |Transcription factor TraR, N-terminal domain |Agrobacterium tumefaciens [TaxId: 358]
d1wuua1 : (ILE163) (PRO212) [view usage] : d.14.1.5 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |GHMP Kinase, N-terminal domain |Galactokinase |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, c.2, d.58, c.56, a.102, c.14, d.122, c.37, c.95, d.153, d.14, d.96, e.7, d.110, d.98, d.142, a.4, d.150, a.111, d.26,
d.24, d.47