Tableau information
Concept source: d2ii1d_ amino acid (a.a.) range (THR233)(LEU286)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HHEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(THR233) (ARG252) H1
(SER256) (GLY268) H2
(GLY268) (GLN274) E3
(LYS280) (LEU286) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 122.6° H2
E3 141.5° -66.6° E3
E4 -30.1° 99.9° 155.7°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2afip_ : (ILE57) (GLY89) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Nitrogenase iron protein |Azotobacter vinelandii [TaxId: 354]
d3h5vc_ : (LYS273) (GLN343) [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |Ionotropic glutamate receptor 2 (GluR2) amino-terminal domain (ATD) |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2jrza_ : (MET2) (LEU42) [view usage] : a.4.3.0 |DNA/RNA-binding 3-helical bundle |ARID-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2h92a_ : (GLY35) (ASP78) [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |CMP kinase |Staphylococcus aureus [TaxId: 1280]
d1sh0b_ : (GLN307) (ASP350) [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |Viral RNA polymerase |Norwalk virus [TaxId: 11983]
d4hc6a_ : (SER44) (GLY99) [view usage] : d.150.1.0 |4'-phosphopantetheinyl transferase |4'-phosphopantetheinyl transferase |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d1zt2b1 : (PHE142) (ASP171) [view usage] : a.262.1.1 |PriB N-terminal domain-like |PriB N-terminal domain-like |PriB N-terminal domain-like |DNA primase large subunit PriB, N-terminal domain |Sulfolobus solfataricus [TaxId: 2287]
d1qxta_ : (TRP57) (PHE114) [view usage] : d.22.1.1 |GFP-like |GFP-like |Fluorescent proteins |Green fluorescent protein, GFP |Jellyfish (Aequorea victoria) [TaxId: 6100]
d4ijfa_ : (SER299) (ILE340) [view usage] : d.388.1.1 |Filoviridae VP35-like |Filoviridae VP35-like |Filoviridae VP35 |Filoviridae VP35 |Zaire ebolavirus - Mayinga (Zaire, 1976) [TaxId: 128952]
d3uk0a_ : (SER304) (THR359) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Rhodopseudomonas palustris [TaxId: 316057]
d1gu8a_ : (LEU4) (PRO71) [view usage] : f.13.1.1 |Family A G protein-coupled receptor-like |Family A G protein-coupled receptor-like |Bacteriorhodopsin-like |Sensory rhodopsin II |Natronobacterium pharaonis [TaxId: 2257]
d2o3ea_ : (SER193) (LEU220) [view usage] : d.92.1.5 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Neurolysin-like |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2pofa1 : (SER191) (GLN228) [view usage] : d.13.1.4 |HIT-like |HIT-like |CDH-like |CDP-diacylglycerol pyrophosphatase CDH |Escherichia coli [TaxId: 562]
d4q61b_ : (GLU54) (SER100) [view usage] : d.13.1.0 |HIT-like |HIT-like |automated matches |automated matches |Helicobacter pylori [TaxId: 85962]
d3akca_ : (GLY34) (ASP80) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d2f1na1 : (ALA180) (VAL219) [view usage] : d.151.1.1 |DNase I-like |DNase I-like |DNase I-like |Cytolethal distending toxin subunit B |Escherichia coli [TaxId: 562]
d2feoa_ : (GLY37) (GLU83) [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |automated matches |Escherichia coli [TaxId: 562]
d3capa_ : (GLY106) (ILE189) [view usage] : f.13.1.2 |Family A G protein-coupled receptor-like |Family A G protein-coupled receptor-like |Rhodopsin-like |automated matches |Cow (Bos taurus) [TaxId: 9913]
d2f2fb1 : (ALA203) (ASP244) [view usage] : d.151.1.1 |DNase I-like |DNase I-like |DNase I-like |Cytolethal distending toxin subunit B |Actinobacillus actinomycetemcomitans [TaxId: 714]
d1h68a1 : (LEU4) (PRO71) [view usage] : f.13.1.1 |Family A G protein-coupled receptor-like |Family A G protein-coupled receptor-like |Bacteriorhodopsin-like |Sensory rhodopsin II |Natronobacterium pharaonis [TaxId: 2257]
d2ei4a_ : (ARG11) (TYR84) [view usage] : f.13.1.1 |Family A G protein-coupled receptor-like |Family A G protein-coupled receptor-like |Bacteriorhodopsin-like |automated matches |Halobacterium sp. [TaxId: 29285]
d3nahb_ : (THR309) (THR352) [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |automated matches |Murine norovirus 1 [TaxId: 223997]
d1sh0a_ : (GLN307) (ASP350) [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |Viral RNA polymerase |Norwalk virus [TaxId: 11983]
d3l29b_ : (SER299) (ILE340) [view usage] : d.388.1.1 |Filoviridae VP35-like |Filoviridae VP35-like |Filoviridae VP35 |Filoviridae VP35 |Zaire ebolavirus - Mayinga (Zaire, 1976) [TaxId: 128952]
d4phtx1 : (LEU85) (ASP114) [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Vibrio vulnificus [TaxId: 216895]
d2d69b2 : (SER38) (PRO89) [view usage] : d.58.9.1 |Ferredoxin-like |RuBisCO, large subunit, small (N-terminal) domain |Ribulose 1,5-bisphosphate carboxylase-oxygenase |Ribulose 1,5-bisphosphate carboxylase-oxygenase |Pyrococcus horikoshii [TaxId: 53953]
d1sqwa2 : (THR5) (TYR46) [view usage] : d.17.6.3 |Cystatin-like |Pre-PUA domain |Nip7p homolog, N-terminal domain |Nip7p homolog, N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d1a3aa_ : (LYS21) (GLY66) [view usage] : d.112.1.1 |Phoshotransferase/anion transport protein |Phoshotransferase/anion transport protein |IIA domain of mannitol-specific and ntr phosphotransferase EII |Phosphotransferase IIa-mannitol |Escherichia coli [TaxId: 562]
d1um0a_ : (TYR36) (GLN86) [view usage] : d.258.1.1 |Chorismate synthase, AroC |Chorismate synthase, AroC |Chorismate synthase, AroC |Chorismate synthase, AroC |Helicobacter pylori [TaxId: 210]
d1iioa_ : (MET3) (ALA51) [view usage] : a.39.4.1 |EF Hand-like |Hypothetical protein MTH865 |Hypothetical protein MTH865 |Hypothetical protein MTH865 |Methanobacterium thermoautotrophicum [TaxId: 145262]
d1fsha_ : (GLY53) (ASP105) [view usage] : a.4.5.31 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |DEP domain |Segment polarity protein Dishevelled-1 |Mouse (Mus musculus) [TaxId: 10090]
d1sh8b_ : (THR5) (PRO39) [view usage] : d.38.1.5 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |PaaI/YdiI-like |Hypothetical protein PA5026 |Pseudomonas aeruginosa [TaxId: 287]
d1q3ta_ : (THR47) (GLY95) [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |CMP kinase |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d3ks4a_ : (SER288) (ILE329) [view usage] : d.388.1.1 |Filoviridae VP35-like |Filoviridae VP35-like |Filoviridae VP35 |Filoviridae VP35 |Reston ebolavirus [TaxId: 129003]
d1geha2 : (THR38) (PRO92) [view usage] : d.58.9.1 |Ferredoxin-like |RuBisCO, large subunit, small (N-terminal) domain |Ribulose 1,5-bisphosphate carboxylase-oxygenase |Ribulose 1,5-bisphosphate carboxylase-oxygenase |Thermococcus kodakaraensis [TaxId: 311400]
d2cwxe2 : (SER38) (PRO89) [view usage] : d.58.9.1 |Ferredoxin-like |RuBisCO, large subunit, small (N-terminal) domain |Ribulose 1,5-bisphosphate carboxylase-oxygenase |Ribulose 1,5-bisphosphate carboxylase-oxygenase |Pyrococcus horikoshii [TaxId: 53953]
d1fuia1 : (ALA397) (LEU451) [view usage] : b.43.2.1 |Reductase/isomerase/elongation factor common domain |FucI/AraA C-terminal domain-like |L-fucose isomerase, C-terminal domain |L-fucose isomerase, C-terminal domain |Escherichia coli [TaxId: 562]
d3gwma_ : (SER44) (SER98) [view usage] : d.150.1.0 |4'-phosphopantetheinyl transferase |4'-phosphopantetheinyl transferase |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
d1sh8a_ : (THR5) (PRO39) [view usage] : d.38.1.5 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |PaaI/YdiI-like |Hypothetical protein PA5026 |Pseudomonas aeruginosa [TaxId: 287]
d4ibbb_ : (SER299) (ILE340) [view usage] : d.388.1.1 |Filoviridae VP35-like |Filoviridae VP35-like |Filoviridae VP35 |Filoviridae VP35 |Zaire ebolavirus - Mayinga (Zaire, 1976) [TaxId: 128952]
d2d69e2 : (SER38) (LEU90) [view usage] : d.58.9.1 |Ferredoxin-like |RuBisCO, large subunit, small (N-terminal) domain |Ribulose 1,5-bisphosphate carboxylase-oxygenase |Ribulose 1,5-bisphosphate carboxylase-oxygenase |Pyrococcus horikoshii [TaxId: 53953]
d4gyca_ : (THR5) (PHE69) [view usage] : f.13.1.1 |Family A G protein-coupled receptor-like |Family A G protein-coupled receptor-like |Bacteriorhodopsin-like |Sensory rhodopsin II |Natronobacterium pharaonis [TaxId: 2257]
d1i1ip_ : (SER193) (LEU220) [view usage] : d.92.1.5 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Neurolysin-like |Neurolysin (endopeptidase 24.16, thimet oligopeptidase) |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3b9nb_ : (GLU153) (CYS214) [view usage] : c.1.16.0 |TIM beta/alpha-barrel |Bacterial luciferase-like |automated matches |automated matches |Geobacillus thermodenitrificans [TaxId: 33940]
d3fkeb_ : (SER299) (ILE340) [view usage] : d.388.1.1 |Filoviridae VP35-like |Filoviridae VP35-like |Filoviridae VP35 |Filoviridae VP35 |Zaire ebolavirus - Mayinga (Zaire, 1976) [TaxId: 128952]
d1flob1 : (ALA35) (PHE79) [view usage] : a.60.9.1 |SAM domain-like |lambda integrase-like, N-terminal domain |lambda integrase-like, N-terminal domain |Flp recombinase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3naha_ : (THR308) (ASN353) [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |automated matches |Murine norovirus 1 [TaxId: 223997]
d3qida_ : (THR308) (ASN353) [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |automated matches |Murine norovirus 1 [TaxId: 223997]
d4dqda_ : (ILE303) (THR357) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Rhodopseudomonas palustris [TaxId: 316058]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, c.1, d.58, d.92, c.93, c.37, c.55, d.151, d.17, d.38, a.4, f.13, a.39, d.150, b.43, d.13, d.112, b.23, a.60, d.388,
d.258, d.22, a.262