Tableau information
Concept source: d2hiqa_ amino acid (a.a.) range (GLY23)(LEU62)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HHEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLY23) (GLN29) H1
(LEU30) (GLU40) H2
(TRP45) (SER51) E3
(GLU56) (LEU62) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -57.8° H2
E3 134.5° 147.3° E3
E4 -61.0° -23.8° 162.0°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1ei5a3 : (THR6) (TRP41) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |D-aminopeptidase, N-terminal domain |Ochrobactrum anthropi [TaxId: 529]
d2qi9c_ : (ARG216) (SER247) [view usage] : c.37.1.12 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |ABC transporter ATPase domain-like |ABC transporter involved in vitamin B12 uptake, BtuD |Escherichia coli [TaxId: 562]
d1uwbb_ : (SER156) (SER191) [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |HIV-1 reverse transcriptase |Human immunodeficiency virus type 1 [TaxId: 11676]
d2arha1 : (LYS105) (LYS154) [view usage] : d.108.1.9 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |Aq_1966-like |Hypothetical protein Aq_1966 |Aquifex aeolicus [TaxId: 63363]
d1h54b1 : (PRO374) (ASN417) [view usage] : a.102.1.4 |alpha/alpha toroid |Six-hairpin glycosidases |Glycosyltransferase family 36 C-terminal domain |Lactobacillus maltose phosphorylase, central domain |Lactobacillus brevis [TaxId: 1580]
d3cjqb2 : (ILE34) (LYS70) [view usage] : d.47.1.1 |Ribosomal L11/L12e N-terminal domain |Ribosomal L11/L12e N-terminal domain |Ribosomal L11/L12e N-terminal domain |Ribosomal protein L11, N-terminal domain |Thermus thermophilus [TaxId: 274]
d1mkma2 : (ASN76) (GLY114) [view usage] : d.110.2.2 |Profilin-like |GAF domain-like |IclR ligand-binding domain-like |Transcriptional regulator IclR, C-terminal domain |Thermotoga maritima [TaxId: 2336]
d2cwwb2 : (ASP67) (TYR112) [view usage] : c.66.1.51 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |hypothetical RNA methyltransferase |Hypothetical protein TTHA1280, middle and C-terminal domains |Thermus thermophilus [TaxId: 274]
d2pt9c_ : (SER231) (LYS275) [view usage] : c.66.1.0 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |automated matches |automated matches |Plasmodium falciparum [TaxId: 36329]
d1x54a2 : (GLN190) (ALA232) [view usage] : d.104.1.0 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |automated matches |automated matches |Pyrococcus horikoshii [TaxId: 53953]
d1qygh2 : (PRO194) (PRO227) [view usage] : b.1.1.2 |Immunoglobulin-like beta-sandwich |Immunoglobulin |C1 set domains (antibody constant domain-like) |Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma |Mouse (Mus musculus) [TaxId: 10090]
d3dgeb2 : (ALA420) (TRP475) [view usage] : d.122.1.3 |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |Histidine kinase |automated matches |Thermotoga maritima [TaxId: 2336]
d4ee8a_ : (PRO72) (SER123) [view usage] : d.313.1.0 |Antiparallel beta/alpha barrel (PT-barrel) |Prenyltransferase-like |automated matches |automated matches |Streptomyces cinnamonensis [TaxId: 1900]
d3v3rb_ : (SER19) (ARG55) [view usage] : e.3.1.0 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |automated matches |automated matches |Acinetobacter baumannii [TaxId: 470]
d1d6ua3 : (ASP191) (GLY252) [view usage] : d.17.2.1 |Cystatin-like |Amine oxidase N-terminal region |Amine oxidase N-terminal region |Copper amine oxidase, domains 1 and 2 |Escherichia coli [TaxId: 562]
d1taqa4 : (PHE749) (GLU790) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |DNA polymerase I (Klenow fragment) |Thermus aquaticus [TaxId: 271]
d2i7cb_ : (SER193) (LYS237) [view usage] : c.66.1.0 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |automated matches |automated matches |Plasmodium falciparum [TaxId: 36329]
d1szva_ : (THR8) (TYR34) [view usage] : d.110.7.1 |Profilin-like |Roadblock/LC7 domain |Roadblock/LC7 domain |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1yfua1 : (PHE10) (PRO44) [view usage] : b.82.1.20 |Double-stranded beta-helix |RmlC-like cupins |3-hydroxyanthranilic acid dioxygenase-like |3-hydroxyanthranilate-3,4-dioxygenase |Ralstonia metallidurans [TaxId: 119219]
d1qnna2 : (LYS92) (ASN141) [view usage] : d.44.1.1 |Fe,Mn superoxide dismutase (SOD), C-terminal domain |Fe,Mn superoxide dismutase (SOD), C-terminal domain |Fe,Mn superoxide dismutase (SOD), C-terminal domain |Cambialistic superoxide dismutase |Porphyromonas gingivalis [TaxId: 837]
d1zoya3 : (ASN517) (LYS605) [view usage] : a.7.3.1 |Spectrin repeat-like |Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain |Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain |Succinate dehydogenase |Pig (Sus scrofa) [TaxId: 9823]
d1d09b1 : (SER67) (ARG96) [view usage] : d.58.2.1 |Ferredoxin-like |Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain |Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain |Aspartate carbamoyltransferase |Escherichia coli [TaxId: 562]
d1gted2 : (GLY767) (SER798) [view usage] : c.1.4.1 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |FMN-linked oxidoreductases |Dihydropyrimidine dehydrogenase, domain 4 |Pig (Sus scrofa) [TaxId: 9823]
d1zvfa1 : (ILE9) (VAL39) [view usage] : b.82.1.20 |Double-stranded beta-helix |RmlC-like cupins |3-hydroxyanthranilic acid dioxygenase-like |3-hydroxyanthranilate-3,4-dioxygenase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1udxa3 : (ALA376) (GLU411) [view usage] : d.242.1.1 |Obg GTP-binding protein C-terminal domain |Obg GTP-binding protein C-terminal domain |Obg GTP-binding protein C-terminal domain |Obg GTP-binding protein C-terminal domain |Thermus thermophilus [TaxId: 274]
d3b1cd_ : (THR17) (PHE39) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Streptococcus anginosus [TaxId: 1328]
d1veub_ : (ARG3) (GLY36) [view usage] : d.110.7.1 |Profilin-like |Roadblock/LC7 domain |Roadblock/LC7 domain |Late endosomal/lysosomal Mp1 interacting protein p14 |Mouse (Mus musculus) [TaxId: 10090]
d1ksia3 : (SER104) (SER163) [view usage] : d.17.2.1 |Cystatin-like |Amine oxidase N-terminal region |Amine oxidase N-terminal region |Copper amine oxidase, domains 1 and 2 |Pea (Pisum sativum) [TaxId: 3888]
d1kkga_ : (PRO8) (LEU57) [view usage] : d.52.7.1 |Alpha-lytic protease prodomain-like |Ribosome-binding factor A, RbfA |Ribosome-binding factor A, RbfA |Ribosome-binding factor A, RbfA |Escherichia coli [TaxId: 562]
d1s1hc_ : (SER96) (GLY154) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1id0a_ : (LYS424) (ARG478) [view usage] : d.122.1.3 |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |Histidine kinase |Histidine kinase PhoQ domain |Escherichia coli [TaxId: 562]
d2htec_ : (SER194) (LYS238) [view usage] : c.66.1.0 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |automated matches |automated matches |Plasmodium falciparum [TaxId: 36329]
d1c47a2 : (ASN264) (GLY297) [view usage] : c.84.1.1 |Phosphoglucomutase, first 3 domains |Phosphoglucomutase, first 3 domains |Phosphoglucomutase, first 3 domains |Phosphoglucomutase |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
d2o9ab_ : (ARG5) (THR47) [view usage] : d.110.2.2 |Profilin-like |GAF domain-like |IclR ligand-binding domain-like |Transcriptional regulator IclR, C-terminal domain |Escherichia coli [TaxId: 562]
d2it9b_ : (ASP34) (GLY80) [view usage] : d.18.1.3 |ssDNA-binding transcriptional regulator domain |ssDNA-binding transcriptional regulator domain |PMN2A0962/syc2379c-like |Hypothetical protein PMN2A_0962 |Prochlorococcus marinus [TaxId: 1219]
d2moba_ : (PRO98) (SER126) [view usage] : d.137.1.1 |Monooxygenase (hydroxylase) regulatory protein |Monooxygenase (hydroxylase) regulatory protein |Monooxygenase (hydroxylase) regulatory protein |Soluble methane monooxygenase regulatory protein B |Methylosinus trichosporium [TaxId: 426]
d3rieb_ : (SER232) (LYS276) [view usage] : c.66.1.0 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |automated matches |automated matches |Plasmodium falciparum [TaxId: 36329]
d3b1ca_ : (THR17) (PHE39) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Streptococcus anginosus [TaxId: 1328]
d3b1cb_ : (THR17) (PHE39) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Streptococcus anginosus [TaxId: 1328]
d1gsaa2 : (THR248) (THR285) [view usage] : d.142.1.1 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |ATP-binding domain of peptide synthetases |Prokaryotic glutathione synthetase, C-domain |Escherichia coli [TaxId: 562]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, e.3, c.1, b.82, c.67, d.58, i.1, a.102, c.66, d.122, c.37, d.104, b.1, d.108, d.110, d.17, d.142, d.137, d.44, d.52,
a.7, d.313, c.84, d.18, d.47, d.242