Tableau information
Concept source: d1ldna2 amino acid (a.a.) range (THR163)(VAL200)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HHEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(THR163) (PHE178) H1
(ALA181) (HIS186) H2
(HIS186) (GLU192) E3
(THR196) (VAL200) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 106.8° H2
E3 146.0° -71.8° E3
E4 -49.6° 86.7° 156.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1y5ea1 : (PHE105) (PRO141) [view usage] : c.57.1.1 |Molybdenum cofactor biosynthesis proteins |Molybdenum cofactor biosynthesis proteins |MogA-like |MoaB |Bacillus cereus [TaxId: 1396]
d1kdoa_ : (GLY37) (GLU83) [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |CMP kinase |Escherichia coli [TaxId: 562]
d7mdhc2 : (ARG199) (PHE237) [view usage] : d.162.1.1 |LDH C-terminal domain-like |LDH C-terminal domain-like |Lactate & malate dehydrogenases, C-terminal domain |Malate dehydrogenase |Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
d3biid_ : (THR27) (PHE75) [view usage] : d.15.3.1 |beta-Grasp (ubiquitin-like) |MoaD/ThiS |MoaD |Molybdopterin synthase subunit MoaD |Escherichia coli [TaxId: 562]
d1s1hd_ : (ARG108) (LEU150) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d7mdha2 : (ARG199) (ASP236) [view usage] : d.162.1.1 |LDH C-terminal domain-like |LDH C-terminal domain-like |Lactate & malate dehydrogenases, C-terminal domain |Malate dehydrogenase |Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
d3fefa2 : (PHE177) (THR215) [view usage] : d.162.1.2 |LDH C-terminal domain-like |LDH C-terminal domain-like |AglA-like glucosidase |automated matches |Bacillus subtilis [TaxId: 1423]
d7mdhd2 : (ARG199) (ASP236) [view usage] : d.162.1.1 |LDH C-terminal domain-like |LDH C-terminal domain-like |Lactate & malate dehydrogenases, C-terminal domain |Malate dehydrogenase |Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
d1fm0d_ : (THR27) (PHE75) [view usage] : d.15.3.1 |beta-Grasp (ubiquitin-like) |MoaD/ThiS |MoaD |Molybdopterin synthase subunit MoaD |Escherichia coli [TaxId: 562]
d2y9ha1 : (ASN21) (THR63) [view usage] : d.58.53.0 |Ferredoxin-like |CRISPR-associated protein |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d3izbd_ : (PRO43) (PHE86) [view usage] : i.1.1.3 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Small subunit |Eukaryotic, cytoplasmic (40S subunit) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1w2bw_ : (SER53) (ALA87) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Prokaryotic (50S subunit) |Haloarcula marismortui [TaxId: 2238]
d3k65a_ : (ALA197) (LEU245) [view usage] : g.14.1.1 |Kringle-like |Kringle-like |Kringle modules |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ztca1 : (ARG167) (VAL207) [view usage] : d.157.1.11 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |TM0894-like |Hypothetical protein TM0894 |Thermotoga maritima [TaxId: 2336]
d1iz9a2 : (ARG157) (LEU195) [view usage] : d.162.1.1 |LDH C-terminal domain-like |LDH C-terminal domain-like |Lactate & malate dehydrogenases, C-terminal domain |Malate dehydrogenase |Thermus thermophilus [TaxId: 274]
d1nvid_ : (THR27) (PHE75) [view usage] : d.15.3.1 |beta-Grasp (ubiquitin-like) |MoaD/ThiS |MoaD |Molybdopterin synthase subunit MoaD |Escherichia coli [TaxId: 562]
d1w62b_ : (LEU237) (PHE290) [view usage] : d.21.1.0 |Diaminopimelate epimerase-like |Diaminopimelate epimerase-like |automated matches |automated matches |Trypanosoma cruzi [TaxId: 5693]
d3e27d_ : (LEU113) (GLU148) [view usage] : c.26.1.3 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Adenylyltransferase |automated matches |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
d2ch4a2 : (GLU401) (VAL447) [view usage] : d.122.1.3 |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |Histidine kinase |Histidine kinase CheA |Thermotoga maritima [TaxId: 2336]
d1ilfa_ : (THR30) (SER65) [view usage] : b.54.1.1 |Core binding factor beta, CBF |Core binding factor beta, CBF |Core binding factor beta, CBF |Core binding factor beta, CBF |Mouse (Mus musculus) [TaxId: 10090]
d1mj9a_ : (GLN244) (VAL287) [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |Histone acetyltransferase ESA1 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1jj2w_ : (PRO52) (ALA87) [view usage] : d.29.1.1 |Ribosomal protein L31e |Ribosomal protein L31e |Ribosomal protein L31e |Ribosomal protein L31e |Haloarcula marismortui [TaxId: 2238]
d1wu7a2 : (LEU50) (LEU78) [view usage] : d.104.1.1 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain |Histidyl-tRNA synthetase (HisRS) |Thermoplasma acidophilum [TaxId: 2303]
d4mdha2 : (ARG156) (VAL194) [view usage] : d.162.1.1 |LDH C-terminal domain-like |LDH C-terminal domain-like |Lactate & malate dehydrogenases, C-terminal domain |Malate dehydrogenase |Pig (Sus scrofa) [TaxId: 9823]
d2xzmw_ : (PRO43) (ILE94) [view usage] : i.1.1.3 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Small subunit |Eukaryotic, cytoplasmic (40S subunit) |Tetrahymena thermophila [TaxId: 5911]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
d.58, i.1, c.26, d.157, d.122, c.37, d.104, c.57, d.108, d.21, d.162, d.15, g.14, b.54, d.29