Tableau information
Concept source: d1j5ya1 amino acid (a.a.) range (SER26)(ALA65)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HHEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(SER26) (LEU34) H1
(SER37) (GLY52) H2
(ASN54) (THR58) E3
(GLY61) (ALA65) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 103.2° H2
E3 -115.0° -141.2° E3
E4 83.4° 27.4° 149.4°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1kita2 : (ALA508) (TYR539) [view usage] : b.29.1.8 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Vibrio cholerae sialidase, N-terminal and insertion domains |Vibrio cholerae sialidase, N-terminal and insertion domains |Vibrio cholerae [TaxId: 666]
d2fuea_ : (THR95) (ARG132) [view usage] : c.108.1.10 |HAD-like |HAD-like |Predicted hydrolases Cof |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1vdha_ : (PHE26) (LEU79) [view usage] : d.58.4.10 |Ferredoxin-like |Dimeric alpha+beta barrel |Chlorite dismutase-like |Polyketide synthase CurD homologue TTHA1714/TTC1352 |Thermus thermophilus [TaxId: 274]
d3rjpa_ : (THR175) (LYS228) [view usage] : a.4.6.0 |DNA/RNA-binding 3-helical bundle |C-terminal effector domain of the bipartite response regulators |automated matches |automated matches |Streptococcus pyogenes [TaxId: 1314]
d1iz6a2 : (PRO100) (ILE130) [view usage] : b.40.4.5 |OB-fold |Nucleic acid-binding proteins |Cold shock DNA-binding domain-like |C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a) |Pyrococcus horikoshii [TaxId: 53953]
d2iefc_ : (THR4) (HIS44) [view usage] : a.6.1.7 |Putative DNA-binding domain |Putative DNA-binding domain |Excisionase-like |Excisionase Xis |Bacteriophage lambda [TaxId: 10710]
d1t0tv_ : (TRP22) (LEU75) [view usage] : d.58.4.10 |Ferredoxin-like |Dimeric alpha+beta barrel |Chlorite dismutase-like |YwfI homologue |Bacillus stearothermophilus [TaxId: 1422]
d1i1qa_ : (SER74) (LEU111) [view usage] : d.161.1.1 |ADC synthase |ADC synthase |ADC synthase |Anthranilate synthase aminodeoxyisochorismate synthase/lyase subunit, TrpE |Salmonella typhimurium [TaxId: 90371]
d1evka2 : (ARG301) (ILE329) [view usage] : d.104.1.1 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain |Threonyl-tRNA synthetase (ThrRS) |Escherichia coli [TaxId: 562]
d3kfaa_ : (THR277) (GLU316) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1rkna_ : (PRO56) (ASP95) [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcus aureus [TaxId: 1280]
d2bh2b2 : (PRO391) (ARG431) [view usage] : c.66.1.40 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |(Uracil-5-)-methyltransferase |rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain |Escherichia coli [TaxId: 562]
d4nhjb_ : (ASP181) (HIS235) [view usage] : a.4.6.0 |DNA/RNA-binding 3-helical bundle |C-terminal effector domain of the bipartite response regulators |automated matches |automated matches |Klebsiella pneumoniae [TaxId: 573]
d3q9va_ : (SER169) (GLY221) [view usage] : a.4.6.0 |DNA/RNA-binding 3-helical bundle |C-terminal effector domain of the bipartite response regulators |automated matches |automated matches |Deinococcus radiodurans [TaxId: 1299]
d1ucra_ : (PHE24) (LEU65) [view usage] : a.4.5.45 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Dissimilatory sulfite reductase DsvD |Dissimilatory sulfite reductase DsvD |Desulfovibrio vulgaris [TaxId: 881]
d1t2wa_ : (LYS162) (THR203) [view usage] : b.100.1.1 |Sortase |Sortase |Sortase |Sortase A |Staphylococcus aureus [TaxId: 1280]
d3rhkb_ : (LEU1112) (PRO1158) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |Hepatocyte growth factor receptor, c-MET |Human (Homo sapiens) [TaxId: 9606]
d1js9b_ : (ASP139) (VAL176) [view usage] : b.121.4.5 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Bromoviridae-like VP |Cucumovirus coat protein |BMV (Brome mosaic virus) [TaxId: 12302]
d1hxda1 : (SER21) (GLU62) [view usage] : a.4.5.1 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Biotin repressor-like |Biotin repressor, N-terminal domain |Escherichia coli [TaxId: 562]
d4ixaa_ : (SER174) (GLU226) [view usage] : a.4.6.0 |DNA/RNA-binding 3-helical bundle |C-terminal effector domain of the bipartite response regulators |automated matches |automated matches |Staphylococcus epidermidis [TaxId: 176280]
d2nefa_ : (THR80) (VAL146) [view usage] : d.102.1.1 |Regulatory factor Nef |Regulatory factor Nef |Regulatory factor Nef |Regulatory factor Nef |Human immunodeficiency virus type 1 [TaxId: 11676]
d2og0a_ : (THR4) (HIS44) [view usage] : a.6.1.7 |Putative DNA-binding domain |Putative DNA-binding domain |Excisionase-like |Excisionase Xis |Bacteriophage lambda [TaxId: 10710]
d1bm8a_ : (THR37) (PRO79) [view usage] : d.34.1.1 |DNA-binding domain of Mlu1-box binding protein MBP1 |DNA-binding domain of Mlu1-box binding protein MBP1 |DNA-binding domain of Mlu1-box binding protein MBP1 |DNA-binding domain of Mlu1-box binding protein MBP1 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1l3ga_ : (THR37) (PRO79) [view usage] : d.34.1.1 |DNA-binding domain of Mlu1-box binding protein MBP1 |DNA-binding domain of Mlu1-box binding protein MBP1 |DNA-binding domain of Mlu1-box binding protein MBP1 |DNA-binding domain of Mlu1-box binding protein MBP1 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4qxoa_ : (SER154) (LEU204) [view usage] : d.387.1.1 |STING C-terminal-like |STING, TM173 CTD-like |Tyrosinase cofactor MelC1 |Tyrosinase cofactor MelC1 |Human (Homo sapiens) [TaxId: 9606]
d4hwra1 : (ARG301) (ILE329) [view usage] : d.104.1.1 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain |automated matches |Escherichia coli K-12 [TaxId: 83333]
d2bh2a2 : (PRO391) (ARG431) [view usage] : c.66.1.40 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |(Uracil-5-)-methyltransferase |rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain |Escherichia coli [TaxId: 562]
d4nhja_ : (ASP181) (HIS235) [view usage] : a.4.6.0 |DNA/RNA-binding 3-helical bundle |C-terminal effector domain of the bipartite response regulators |automated matches |automated matches |Klebsiella pneumoniae [TaxId: 573]
d1ti2b2 : (ASP95) (CYS126) [view usage] : d.58.1.5 |Ferredoxin-like |4Fe-4S ferredoxins |Ferredoxin domains from multidomain proteins |Transhydroxylase beta subunit, BthL, N-terminal domain |Pelobacter acidigallici [TaxId: 35816]
d1bs2a3 : (PRO72) (PHE114) [view usage] : d.67.2.1 |RRF/tRNA synthetase additional domain-like |Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain |Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain |Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3bn6a_ : (PRO13) (GLY65) [view usage] : b.18.1.0 |Galactose-binding domain-like |Galactose-binding domain-like |automated matches |automated matches |Cow (Bos taurus) [TaxId: 9913]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
d.58, c.108, b.29, c.66, d.144, b.40, d.104, b.18, b.121, a.4, d.67, a.6, b.100, d.161, d.387, d.34, d.102