Tableau information
Concept source: d1u6zb1 amino acid (a.a.) range (ASN398)(PRO472)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HHEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASN398) (HIS412) H1
(LYS428) (ASN447) H2
(PRO456) (THR462) E3
(HIS466) (PRO472) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -43.8° H2
E3 111.9° 153.1° E3
E4 -62.6° -31.3° 163.0°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±10.6° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3dc5a2 : (SER89) (ASN141) [view usage] : d.44.1.0 |Fe,Mn superoxide dismutase (SOD), C-terminal domain |Fe,Mn superoxide dismutase (SOD), C-terminal domain |automated matches |automated matches |Nematode (Caenorhabditis elegans) [TaxId: 6239]
d1ebfa2 : (ASP306) (GLY336) [view usage] : d.81.1.2 |FwdE/GAPDH domain-like |Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain |Homoserine dehydrogenase-like |Homoserine dehydrogenase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4dqqa2 : (PRO744) (ASP775) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |automated matches |Geobacillus kaustophilus [TaxId: 235909]
d3a5qa2 : (MET330) (PRO381) [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Rheum palmatum [TaxId: 137221]
d1zbqa1 : (PRO206) (LYS246) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Peroxisomal multifunctional enzyme type 2 |Human (Homo sapiens) [TaxId: 9606]
d4qiie_ : (GLY271) (PHE314) [view usage] : c.14.1.3 |ClpP/crotonase |ClpP/crotonase |Crotonase-like |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d1zxza_ : (ASP22) (THR67) [view usage] : d.167.1.0 |Peptide deformylase |Peptide deformylase |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d4bfta_ : (PHE149) (HIS194) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d3awja2 : (MET347) (ILE399) [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Huperzia serrata [TaxId: 355589]
d3d9wa_ : (TYR199) (ASP236) [view usage] : d.3.1.0 |Cysteine proteinases |Cysteine proteinases |automated matches |automated matches |Nocardia farcinica [TaxId: 37329]
d4ez9a2 : (PRO744) (ASP775) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |automated matches |Geobacillus kaustophilus [TaxId: 1462]
d3h30a_ : (THR129) (HIS183) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |Protein kinase CK2, alpha subunit |Human (Homo sapiens) [TaxId: 9606]
d1gz6a_ : (PRO206) (LYS246) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |(3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3tvuc1 : (PRO1495) (LYS1572) [view usage] : c.14.1.4 |ClpP/crotonase |ClpP/crotonase |Biotin dependent carboxylase carboxyltransferase domain |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
d4l0ga_ : (SER348) (PRO405) [view usage] : a.102.1.2 |alpha/alpha toroid |Six-hairpin glycosidases |Cellulases catalytic domain |automated matches |Caldicellulosiruptor bescii [TaxId: 521460]
d2d3ma2 : (MET353) (PRO404) [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Aloe arborescens [TaxId: 45385]
d1u6zb1 : (ASN398) (PRO472) [view usage] : a.211.1.5 |HD-domain/PDEase-like |HD-domain/PDEase-like |Ppx associated domain |Exopolyphosphatase Ppx C-terminal domain |Escherichia coli [TaxId: 562]
d1omsb_ : (GLY59) (VAL115) [view usage] : d.241.2.1 |Ribosome binding domain-like |Trigger factor ribosome-binding domain |Trigger factor ribosome-binding domain |Trigger factor ribosome-binding domain |Escherichia coli [TaxId: 562]
d1zxzb_ : (ASP22) (LYS68) [view usage] : d.167.1.0 |Peptide deformylase |Peptide deformylase |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1cfea_ : (ASN79) (ASN122) [view usage] : d.111.1.1 |PR-1-like |PR-1-like |PR-1-like |Pathogenesis-related protein 1 (PR1) |Tomato (Lycopersicon esculentum), P14a [TaxId: 4081]
d1xesa2 : (MET340) (ILE392) [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Scots pine (Pinus sylvestris) [TaxId: 3349]
d1i58a_ : (LYS494) (ARG536) [view usage] : d.122.1.3 |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |Histidine kinase |Histidine kinase CheA |Thermotoga maritima [TaxId: 2336]
d1s66l_ : (ASN16) (PRO47) [view usage] : d.110.3.2 |Profilin-like |PYP-like sensor domain (PAS domain) |Heme-binding PAS domain |Direct oxygen sensor protein, DOS |Escherichia coli [TaxId: 562]
d1sv2a_ : (THR21) (GLU66) [view usage] : d.167.1.1 |Peptide deformylase |Peptide deformylase |Peptide deformylase |Peptide deformylase |Leptospira interrogans [TaxId: 173]
d1i8ba2 : (MET337) (ALA388) [view usage] : c.95.1.2 |Thiolase-like |Thiolase-like |Chalcone synthase-like |Chalcone synthase |Alfalfa (Medicago sativa) [TaxId: 3879]
d1y6ha_ : (THR21) (SER65) [view usage] : d.167.1.1 |Peptide deformylase |Peptide deformylase |Peptide deformylase |Peptide deformylase |Leptospira interrogans [TaxId: 173]
d4v1ac_ : (ASP129) (ASP183) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, mitochondrial (54S or 39S subunit) |Pig (Sus scrofa) [TaxId: 9823]
d1xrja_ : (HIS85) (TYR127) [view usage] : c.37.1.6 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Phosphoribulokinase/pantothenate kinase |Uridine-cytidine kinase 2 |Human (Homo sapiens) [TaxId: 9606]
d2d7va1 : (VAL59) (GLY126) [view usage] : d.227.1.1 |OsmC-like |OsmC-like |Ohr/OsmC resistance proteins |Hypothetical protein VCA0330 |Vibrio cholerae [TaxId: 666]
d2h28b_ : (SER55) (THR103) [view usage] : d.110.8.1 |Profilin-like |YeeU-like |YagB/YeeU/YfjZ-like |Hypothetical protein YeeU |Escherichia coli [TaxId: 562]
d2floa1 : (GLU400) (PRO472) [view usage] : a.211.1.5 |HD-domain/PDEase-like |HD-domain/PDEase-like |Ppx associated domain |Exopolyphosphatase Ppx C-terminal domain |Escherichia coli [TaxId: 562]
d1sv2b_ : (THR21) (GLU66) [view usage] : d.167.1.1 |Peptide deformylase |Peptide deformylase |Peptide deformylase |Peptide deformylase |Leptospira interrogans [TaxId: 173]
d3tr6a_ : (ASP180) (LYS220) [view usage] : c.66.1.0 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |automated matches |automated matches |Coxiella burnetii [TaxId: 777]
d3a5qb2 : (MET330) (PRO381) [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Rheum palmatum [TaxId: 137221]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, c.2, i.1, a.102, c.66, c.14, a.211, d.122, d.144, c.37, c.95, d.3, d.81, d.110, d.167, d.44, d.111, d.227, d.241