Tableau information
Concept source: d1js4a1 amino acid (a.a.) range (LYS263)(LEU310)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HHEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(LYS263) (GLU274) H1
(LYS277) (THR292) H2
(VAL300) (PRO304) E3
(GLY306) (LEU310) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -132.0° H2
E3 -104.0° -29.6° E3
E4 109.2° 118.8° 145.7°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1zbpa1 : (GLU99) (ASP147) [view usage] : e.61.1.1 |ImpE-like |ImpE-like |ImpE-like |Hypothetical protein VPA1032 |Vibrio parahaemolyticus [TaxId: 670]
d1k3ca1 : (SER451) (GLU485) [view usage] : c.91.1.1 |PEP carboxykinase-like |PEP carboxykinase-like |PEP carboxykinase C-terminal domain |Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) |Escherichia coli [TaxId: 562]
d1ytma2 : (SER445) (GLU479) [view usage] : c.91.1.0 |PEP carboxykinase-like |PEP carboxykinase-like |automated matches |automated matches |Anaerobiospirillum succiniciproducens [TaxId: 13335]
d4ez9a2 : (ASP496) (ALA558) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |automated matches |Geobacillus kaustophilus [TaxId: 1462]
d1ro9a_ : (ASP346) (ASN376) [view usage] : a.211.1.2 |HD-domain/PDEase-like |HD-domain/PDEase-like |PDEase |Catalytic domain of cyclic nucleotide phosphodiesterase 4b2b |Human (Homo sapiens) [TaxId: 9606]
d1hcua_ : (SER246) (LEU293) [view usage] : a.102.2.1 |alpha/alpha toroid |Seven-hairpin glycosidases |Class I alpha-1;2-mannosidase, catalytic domain |Class I alpha-1;2-mannosidase, catalytic domain |Trichoderma reesei [TaxId: 51453]
d4r9tb_ : (ASN71) (PHE120) [view usage] : d.171.1.0 |Fibrinogen C-terminal domain-like |Fibrinogen C-terminal domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4dqpd2 : (ASP496) (ALA558) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |automated matches |Geobacillus kaustophilus [TaxId: 235909]
d1scec_ : (THR11) (LEU43) [view usage] : d.97.1.1 |Cell cycle regulatory proteins |Cell cycle regulatory proteins |Cell cycle regulatory proteins |suc1 |Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
d2oplb1 : (VAL12) (GLY54) [view usage] : d.227.1.1 |OsmC-like |OsmC-like |Ohr/OsmC resistance proteins |Hypothetical protein GSU2788 |Geobacter sulfurreducens [TaxId: 35554]
d4r6ub_ : (THR34) (LYS67) [view usage] : b.42.1.2 |beta-Trefoil |Cytokine |Interleukin-1 (IL-1) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1kkta_ : (SER268) (ASN320) [view usage] : a.102.2.1 |alpha/alpha toroid |Seven-hairpin glycosidases |Class I alpha-1;2-mannosidase, catalytic domain |Class I alpha-1;2-mannosidase, catalytic domain |Fungus (Penicillium citrinum) [TaxId: 5077]
d1gxdc_ : (ASP150) (TRP177) [view usage] : b.40.3.1 |OB-fold |TIMP-like |Tissue inhibitor of metalloproteinases, TIMP |TIMP-2 |Human (Homo sapiens) [TaxId: 9606]
d2x0ia2 : (PHE234) (ILE305) [view usage] : d.162.1.1 |LDH C-terminal domain-like |LDH C-terminal domain-like |Lactate & malate dehydrogenases, C-terminal domain |Lactate dehydrogenase |Archaeoglobus fulgidus [TaxId: 2234]
d1ct9a2 : (HIS80) (ARG137) [view usage] : d.153.1.1 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |Class II glutamine amidotransferases |Asparagine synthetase B, N-terminal domain |Escherichia coli [TaxId: 562]
d1mo9a3 : (MET438) (GLY471) [view usage] : d.87.1.1 |CO dehydrogenase flavoprotein C-domain-like |FAD/NAD-linked reductases, dimerisation (C-terminal) domain |FAD/NAD-linked reductases, dimerisation (C-terminal) domain |NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase |Xanthobacter sp., py2 [TaxId: 35809]
d1hcub_ : (SER246) (LEU293) [view usage] : a.102.2.1 |alpha/alpha toroid |Seven-hairpin glycosidases |Class I alpha-1;2-mannosidase, catalytic domain |Class I alpha-1;2-mannosidase, catalytic domain |Trichoderma reesei [TaxId: 51453]
d3qt3a_ : (GLU253) (GLU288) [view usage] : a.102.1.8 |alpha/alpha toroid |Six-hairpin glycosidases |CPF0428-like |Hypothetical protein CPF0428 |Clostridium perfringens [TaxId: 1502]
d2ogba_ : (LEU262) (MSE289) [view usage] : d.345.1.1 |NRDP1 C-terminal domain-like |NRDP1 C-terminal domain-like |USP8 interacting domain |E3 ubiquitin-protein ligase NRDP1 |Human (Homo sapiens) [TaxId: 9606]
d2i4sa1 : (GLU204) (PRO243) [view usage] : b.36.1.5 |PDZ domain-like |PDZ domain-like |EpsC C-terminal domain-like |General secretion pathway protein C, EpsC |Vibrio cholerae [TaxId: 666]
d1puca_ : (THR11) (LEU43) [view usage] : d.97.1.1 |Cell cycle regulatory proteins |Cell cycle regulatory proteins |Cell cycle regulatory proteins |suc1 |Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
d1hcud_ : (GLY242) (LEU293) [view usage] : a.102.2.1 |alpha/alpha toroid |Seven-hairpin glycosidases |Class I alpha-1;2-mannosidase, catalytic domain |Class I alpha-1;2-mannosidase, catalytic domain |Trichoderma reesei [TaxId: 51453]
d1ii2a1 : (LEU431) (TYR464) [view usage] : c.91.1.1 |PEP carboxykinase-like |PEP carboxykinase-like |PEP carboxykinase C-terminal domain |Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) |Trypanosoma cruzi [TaxId: 5693]
d3scka_ : (ASN103) (LEU143) [view usage] : d.92.1.5 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Neurolysin-like |Angiotensin converting enzyme 2, ACE2 |Paguma larvata
d1r42a_ : (ASN103) (LEU144) [view usage] : d.92.1.5 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Neurolysin-like |Angiotensin converting enzyme 2, ACE2 |Human (Homo sapiens) [TaxId: 9606]
d1l1ya_ : (GLY441) (PRO488) [view usage] : a.102.1.2 |alpha/alpha toroid |Six-hairpin glycosidases |Cellulases catalytic domain |Processive endocellulase CelF (Cel48F) |Clostridium thermocellum [TaxId: 1515]
d2psfa_ : (PRO8) (TYR37) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Renilla reniformis [TaxId: 6136]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, c.69, a.102, d.92, a.211, b.40, d.153, d.171, b.42, d.87, d.162, c.91, d.227, b.36, d.97, e.61, d.345