Tableau information
Concept source: d3hhhb_ amino acid (a.a.) range (GLN36)(LEU77)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HHEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLN36) (VAL42) H1
(GLY44) (GLN57) H2
(TRP58) (LYS63) E3
(ARG72) (LEU77) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 95.9° H2
E3 -69.7° -112.8° E3
E4 125.7° 54.6° 158.0°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1vzva_ : (GLY96) (CYS143) [view usage] : b.57.1.1 |Herpes virus serine proteinase, assemblin |Herpes virus serine proteinase, assemblin |Herpes virus serine proteinase, assemblin |VZV protease |Varicella-Zoster virus [TaxId: 10335]
d3m5ba_ : (ASP15) (ALA42) [view usage] : d.42.1.0 |POZ domain |POZ domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1oyya1 : (LEU455) (GLU496) [view usage] : a.4.5.43 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |RecQ helicase DNA-binding domain-like |DNA helicase RecQ DNA-binding domain |Escherichia coli [TaxId: 562]
d4eo9a_ : (LYS103) (LEU155) [view usage] : c.60.1.0 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |automated matches |automated matches |Mycobacterium leprae [TaxId: 561304]
d1zbpa1 : (SER183) (GLY239) [view usage] : e.61.1.1 |ImpE-like |ImpE-like |ImpE-like |Hypothetical protein VPA1032 |Vibrio parahaemolyticus [TaxId: 670]
d1pc6b_ : (ARG41) (GLY98) [view usage] : d.262.1.1 |NinB |NinB |NinB |NinB |Bacteriophage lambda [TaxId: 10710]
d3sxra_ : (LYS448) (GLU490) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1gupb2 : (GLU178) (VAL223) [view usage] : d.13.1.2 |HIT-like |HIT-like |Hexose-1-phosphate uridylyltransferase |Galactose-1-phosphate uridylyltransferase |Escherichia coli [TaxId: 562]
d1s7aa_ : (ASN56) (ARG91) [view usage] : a.4.5.46 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |La domain |Lupus La autoantigen N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d1ia9b_ : (PRO1650) (GLU1719) [view usage] : d.144.1.5 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |MHCK/EF2 kinase |Trp Ca-channel kinase domain |Mouse (Mus musculus) [TaxId: 10090]
d1mhyd_ : (ASP397) (SER428) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |Methane monooxygenase hydrolase alpha subunit |Methylosinus trichosporium [TaxId: 426]
d2cqka1 : (MET90) (PRO124) [view usage] : a.4.5.46 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |La domain |La-related protein 4 LARP4 |Human (Homo sapiens) [TaxId: 9606]
d1riid_ : (LYS101) (LEU153) [view usage] : c.60.1.1 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |Cofactor-dependent phosphoglycerate mutase |Phosphoglycerate mutase |Mycobacterium tuberculosis [TaxId: 1773]
d1mmod_ : (ASP397) (CYS426) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |Methane monooxygenase hydrolase alpha subunit |Methylococcus capsulatus [TaxId: 414]
d3kica_ : (THR492) (PRO520) [view usage] : b.121.5.2 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |ssDNA viruses |Parvoviridae-like VP |automated matches |Adeno-associated virus 3b [TaxId: 68742]
d3qu3a_ : (GLN56) (LEU124) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d3qu3c_ : (GLN56) (LEU124) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2ab5a2 : (THR391) (ASN435) [view usage] : d.95.2.0 |Homing endonuclease-like |Homing endonucleases |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1oywa1 : (GLY459) (THR495) [view usage] : a.4.5.43 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |RecQ helicase DNA-binding domain-like |DNA helicase RecQ DNA-binding domain |Escherichia coli [TaxId: 562]
d1ldda_ : (GLY813) (ILE845) [view usage] : a.4.5.34 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |SCF ubiquitin ligase complex WHB domain |Anaphase promoting complex (APC) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2m5wa_ : (ASN49) (LEU83) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Slime mold (Dictyostelium discoideum) [TaxId: 44689]
d1hxqb2 : (GLU178) (VAL223) [view usage] : d.13.1.2 |HIT-like |HIT-like |Hexose-1-phosphate uridylyltransferase |Galactose-1-phosphate uridylyltransferase |Escherichia coli [TaxId: 562]
d2pi0b_ : (ILE53) (PHE109) [view usage] : a.4.5.23 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Interferon regulatory factor |Interferon regulatory factor 3, IRF-3 |Human (Homo sapiens) [TaxId: 9606]
d1zh5a1 : (ASN56) (ARG91) [view usage] : a.4.5.46 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |La domain |Lupus La autoantigen N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d3a0ha_ : (TRP14) (SER70) [view usage] : f.26.1.1 |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |Bacterial photosystem II reaction centre, L and M subunits |Photosystem Q(B) protein 1, PsbA1 |Thermosynechococcus vulcanus [TaxId: 32053]
d2pmua_ : (ARG204) (ARG244) [view usage] : a.4.6.0 |DNA/RNA-binding 3-helical bundle |C-terminal effector domain of the bipartite response regulators |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d2fzpa1 : (THR261) (MET289) [view usage] : d.345.1.1 |NRDP1 C-terminal domain-like |NRDP1 C-terminal domain-like |USP8 interacting domain |E3 ubiquitin-protein ligase NRDP1 |Human (Homo sapiens) [TaxId: 9606]
d2bhra1 : (PRO543) (LYS590) [view usage] : c.37.1.14 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |RNA helicase |Dengue virus helicase |Dengue virus type 2 [TaxId: 11060]
d1fz2b_ : (ASP397) (SER428) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |Methane monooxygenase hydrolase alpha subunit |Methylococcus capsulatus [TaxId: 414]
d1hxpb2 : (GLU178) (VAL223) [view usage] : d.13.1.2 |HIT-like |HIT-like |Hexose-1-phosphate uridylyltransferase |Galactose-1-phosphate uridylyltransferase |Escherichia coli [TaxId: 562]
d1wj5a_ : (VAL45) (THR108) [view usage] : a.4.5.59 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |An Obfc1 domain |OB fold-containing protein 1, Obfc1 |Mouse (Mus musculus) [TaxId: 10090]
d2e5na_ : (ASN42) (TYR71) [view usage] : a.4.5.81 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |ELL N2 domain-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3puvg_ : (ALA11) (PRO77) [view usage] : f.58.1.1 |MetI-like |MetI-like |MetI-like |automated matches |Escherichia coli K-12 [TaxId: 83333]
d2hfha_ : (PRO38) (LEU79) [view usage] : a.4.5.14 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Forkhead DNA-binding domain |Genesis |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1gupa2 : (GLU178) (VAL223) [view usage] : d.13.1.2 |HIT-like |HIT-like |Hexose-1-phosphate uridylyltransferase |Galactose-1-phosphate uridylyltransferase |Escherichia coli [TaxId: 562]
d1wyta1 : (GLN324) (ALA381) [view usage] : c.67.1.7 |PLP-dependent transferase-like |PLP-dependent transferases |Glycine dehydrogenase subunits (GDC-P) |Glycine dehydrogenase (decarboxylating) subunit 1 |Thermus thermophilus [TaxId: 274]
d1fyza_ : (ASP397) (SER428) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |Methane monooxygenase hydrolase alpha subunit |Methylococcus capsulatus [TaxId: 414]
d2v9va2 : (ARG472) (LEU504) [view usage] : a.4.5.35 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |C-terminal fragment of elongation factor SelB |automated matches |Moorella thermoacetica [TaxId: 1525]
d1kq8a_ : (PHE37) (MET79) [view usage] : a.4.5.14 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Forkhead DNA-binding domain |HFH-1 (HNF-3 forkhead homolog-1) |Norway rat (Rattus norvegicus) [TaxId: 10116]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.67, d.144, c.37, b.121, f.26, c.60, a.25, a.4, d.95, d.42, d.13, f.58, e.61, d.345, b.57, d.262