Protein Concepts Dictionary

Tableau information

Concept source:  d3ff6b1  amino acid (a.a.) range (VAL1697)(MET1759)

nSSEs in this Concept: 4

String of secondary struct.elems. (SSEs) defining this concept: HHEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	 (VAL1697) (GLY1713) H1
	 (TYR1716) (GLY1733) H2
	 (THR1744) (LEU1750) E3
	 (GLN1755) (MET1759) E4

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                          
H2      -69.7°   H2                   
E3       91.1°  152.7°   E3            
E4     -110.4°  -63.7°  143.4°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2yxeb_ :    (LYS43)   (CYS88)   [view usage] : c.66.1.0 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |automated matches |automated matches |Methanocaldococcus jannaschii [TaxId: 243232]
 d4byya1 :     (GLY3)   (PHE41)   [view usage] : b.82.3.0 |Double-stranded beta-helix |cAMP-binding domain-like |automated matches |automated matches |Corynebacterium glutamicum [TaxId: 1718]
 d3tdca1 :  (LEU1727) (MET1784)   [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1l5xa_ :   (TRP132)  (LEU184)   [view usage] : c.106.1.1 |SurE-like |SurE-like |SurE-like |SurE homolog PAE2908 (SurE-alpha) |Pyrobaculum aerophilum [TaxId: 13773]
 d3itab1 :   (THR157)  (PRO192)   [view usage] : e.3.1.0 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |automated matches |automated matches |Escherichia coli [TaxId: 562]
 d4w6wb_ :   (GLY903)  (SER925)   [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |automated matches |Llama (Lama glama) [TaxId: 9844]
 d1bg2a_ :   (ASP101)  (ASP144)   [view usage] : c.37.1.9 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Motor proteins |Kinesin |Human (Homo sapiens) [TaxId: 9606]
 d4l2ja_ :   (ASP153)  (PHE202)   [view usage] : b.25.1.1 |Osmotin, thaumatin-like protein |Osmotin, thaumatin-like protein |Osmotin, thaumatin-like protein |automated matches |Calotropis procera [TaxId: 141467]
 d3hqda_ :   (ASP130)  (LEU172)   [view usage] : c.37.1.9 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Motor proteins |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1ji3a_ :   (ASP310)  (GLY346)   [view usage] : c.69.1.18 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Bacterial lipase |Lipase L1 |Bacillus stearothermophilus, P1 [TaxId: 1422]
 d1yrga_ :    (THR17)   (THR46)   [view usage] : c.10.1.2 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |RNI-like |Rna1p (RanGAP1), N-terminal domain |Rna1p (RanGAP1), N-terminal domain |Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
 d1qs2a2 :   (SER366)  (LEU389)   [view usage] : d.166.1.1 |ADP-ribosylation |ADP-ribosylation |ADP-ribosylating toxins |Vegetative insecticidal protein 2 (VIP2) |Bacillus cereus [TaxId: 1396]
 d3ff6a1 :  (VAL1697) (GLU1758)   [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1mx1a_ :  (GLU1471) (LYS1538)   [view usage] : c.69.1.1 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Acetylcholinesterase-like |Mammalian carboxylesterase (liver carboxylesterase I) |Human (Homo sapiens) [TaxId: 9606]
 d4p7xa_ :    (THR67)  (ILE104)   [view usage] : b.82.2.0 |Double-stranded beta-helix |Clavaminate synthase-like |automated matches |automated matches |Rhizobium loti [TaxId: 266835]
 d1goja_ :   (ASP105)  (ASP148)   [view usage] : c.37.1.9 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Motor proteins |Kinesin |Fungus (Neurospora crassa) [TaxId: 5141]
 d3cbda_ :   (LYS391)  (LYS449)   [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |automated matches |Bacillus megaterium [TaxId: 1404]
 d4duaa_ :   (PRO386)  (LYS449)   [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 bm-3 |Bacillus megaterium [TaxId: 1404]
 d4azma_ :    (GLY18)   (THR62)   [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1yqqa_ :    (THR95)  (ARG122)   [view usage] : c.56.2.0 |Phosphorylase/hydrolase-like |Purine and uridine phosphorylases |automated matches |automated matches |Escherichia coli [TaxId: 562]
 d3rjlb_ :    (GLU16)   (ASN57)   [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Bacillus licheniformis [TaxId: 279010]
 d4p7wa_ :    (THR67)  (ILE104)   [view usage] : b.82.2.0 |Double-stranded beta-helix |Clavaminate synthase-like |automated matches |automated matches |Rhizobium loti [TaxId: 266835]
 d3ff6b1 :  (VAL1697) (MET1759)   [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3bhma_ :   (SER242)  (TRP276)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Carbonyl reductase/20beta-hydroxysteroid dehydrogenase |Human (Homo sapiens) [TaxId: 9606]
 d4j6ca_ :   (ARG341)  (HIS407)   [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Nocardia farcinica [TaxId: 247156]
 d4duda_ :   (PRO386)  (LYS449)   [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 bm-3 |Bacillus megaterium [TaxId: 1404]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   e.3,    c.10,    b.82,    c.69,   a.104,     c.2,    c.82,    c.56,    c.66,    c.14,    c.37,   d.166,    b.60,     b.1,    b.25,   c.106