Tableau information
Concept source: d1tvfa2 amino acid (a.a.) range (THR204)(THR240)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HHEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(THR204) (THR219) H1
(LEU223) (GLN228) H2
(LEU229) (THR233) E3
(ALA235) (THR240) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -115.1° H2
E3 66.9° -99.5° E3
E4 -125.5° -93.7° 155.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1o7fa1 : (SER182) (ARG215) [view usage] : a.4.5.31 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |DEP domain |Regulatory domain of epac2, domain 2 |Mouse (Mus musculus) [TaxId: 10090]
d2ahme1 : (SER81) (ASP139) [view usage] : d.302.1.1 |Coronavirus NSP8-like |Coronavirus NSP8-like |Coronavirus NSP8-like |Nonstructural protein 8, NSP8 |SARS coronavirus [TaxId: 227859]
d1es3a_ : (ARG155) (ASN198) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |D-ala carboxypeptidase/transpeptidase |Streptomyces sp., K15 [TaxId: 1931]
d1ueab_ : (SER109) (ASP149) [view usage] : b.40.3.1 |OB-fold |TIMP-like |Tissue inhibitor of metalloproteinases, TIMP |TIMP-1 |Human (Homo sapiens) [TaxId: 9606]
d3huma1 : (THR204) (THR240) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |Pencillin binding protein 4 (PbpD), N-terminal domain |Staphylococcus aureus [TaxId: 1280]
d1nxca_ : (GLU549) (ASP602) [view usage] : a.102.2.1 |alpha/alpha toroid |Seven-hairpin glycosidases |Class I alpha-1;2-mannosidase, catalytic domain |Class I alpha-1;2-mannosidase, catalytic domain |Mouse (Mus musculus) [TaxId: 10090]
d1w5ct_ : (THR56) (ALA89) [view usage] : i.5.1.1 |Photosystems |Photosystems |Photosystems |Photosystem II |Thermosynechococcus vulcanus [TaxId: 32053]
d2j0nb_ : (TRP135) (GLN191) [view usage] : a.250.1.1 |IpaD-like |IpaD-like |IpaD-like |Invasin IpaD |Shigella flexneri [TaxId: 623]
d1ynjd1 : (SER110) (THR154) [view usage] : e.29.1.2 |beta and beta-prime subunits of DNA dependent RNA-polymerase |beta and beta-prime subunits of DNA dependent RNA-polymerase |RNA-polymerase beta-prime |RNA-polymerase beta-prime |Thermus aquaticus [TaxId: 271]
d3ne6a2 : (LEU566) (SER628) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
d3klia1 : (GLU194) (PRO236) [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |HIV-1 reverse transcriptase |Human immunodeficiency virus type 1 [TaxId: 11676]
d1lcsa_ : (ASP42) (LYS124) [view usage] : b.20.1.1 |ENV polyprotein, receptor-binding domain |ENV polyprotein, receptor-binding domain |ENV polyprotein, receptor-binding domain |FLV receptor-binding domain |Feline leukemia virus, strain b/lambda-b1 [TaxId: 11768]
d2b5ea3 : (ASP294) (LEU327) [view usage] : c.47.1.2 |Thioredoxin fold |Thioredoxin-like |PDI-like |Protein disulfide isomerase, PDI |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1mx9d_ : (GLY4477) (GLU4519) [view usage] : c.69.1.1 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Acetylcholinesterase-like |Mammalian carboxylesterase (liver carboxylesterase I) |Human (Homo sapiens) [TaxId: 9606]
d2cu9a1 : (ASN80) (MET118) [view usage] : b.1.22.1 |Immunoglobulin-like beta-sandwich |ASF1-like |ASF1-like |Anti-silencing protein 1, ASF1 |Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
d1x3la_ : (ARG7) (GLN41) [view usage] : c.118.1.0 |GckA/TtuD-like |GckA/TtuD-like |automated matches |automated matches |Pyrococcus horikoshii [TaxId: 70601]
d2ahmg1 : (LEU43) (ASP139) [view usage] : d.302.1.1 |Coronavirus NSP8-like |Coronavirus NSP8-like |Coronavirus NSP8-like |Nonstructural protein 8, NSP8 |SARS coronavirus [TaxId: 227859]
d1oa8d_ : (ALA567) (LYS590) [view usage] : b.145.1.1 |AXH domain |AXH domain |AXH domain |Ataxin-1 |Human (Homo sapiens) [TaxId: 9606]
d3a3ja1 : (SER179) (ASN217) [view usage] : e.3.1.0 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |automated matches |automated matches |Haemophilus influenzae [TaxId: 727]
d1h4ja_ : (ASN266) (THR297) [view usage] : b.70.1.1 |8-bladed beta-propeller |Quinoprotein alcohol dehydrogenase-like |Quinoprotein alcohol dehydrogenase-like |Methanol dehydrogenase, heavy chain |Methylobacterium extorquens [TaxId: 408]
d1exea_ : (THR4) (PRO52) [view usage] : a.55.1.1 |IHF-like DNA-binding proteins |IHF-like DNA-binding proteins |Prokaryotic DNA-bending protein |Transcription factor 1, TF1 |Bacteriophage SPO1 [TaxId: 10685]
d2h5nc_ : (ALA69) (ASP103) [view usage] : a.287.1.2 |TerB-like |TerB-like |PG1108-like |Hypothetical protein PG1108 |Porphyromonas gingivalis [TaxId: 837]
d1an5a_ : (THR78) (ILE112) [view usage] : d.117.1.1 |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase |Escherichia coli [TaxId: 562]
d1skfa_ : (THR153) (ASN200) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |D-ala carboxypeptidase/transpeptidase |Streptomyces sp., K15 [TaxId: 1931]
d1w2la_ : (LEU5) (VAL51) [view usage] : a.3.1.0 |Cytochrome c |Cytochrome c |automated matches |automated matches |Rhodothermus marinus [TaxId: 29549]
d3qj7a_ : (THR78) (ILE112) [view usage] : d.117.1.1 |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d1aiqa_ : (THR78) (ILE112) [view usage] : d.117.1.1 |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase |Escherichia coli [TaxId: 562]
d1tvfa2 : (THR204) (THR240) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |Pencillin binding protein 4 (PbpD), N-terminal domain |Staphylococcus aureus [TaxId: 1280]
d1ffla_ : (THR78) (ILE112) [view usage] : d.117.1.1 |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase |Escherichia coli [TaxId: 562]
d3ntva_ : (ASP185) (ILE229) [view usage] : c.66.1.0 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |automated matches |automated matches |Staphylococcus aureus [TaxId: 196620]
d3it9d1 : (THR157) (ASN193) [view usage] : e.3.1.0 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |automated matches |automated matches |Escherichia coli [TaxId: 562]
d1aola_ : (ASP44) (ASN167) [view usage] : b.20.1.1 |ENV polyprotein, receptor-binding domain |ENV polyprotein, receptor-binding domain |ENV polyprotein, receptor-binding domain |F-MuLV receptor-binding domain |Friend murine leukemia virus [TaxId: 11795]
d1es5a_ : (THR153) (ASN198) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |D-ala carboxypeptidase/transpeptidase |Streptomyces sp., K15 [TaxId: 1931]
d4fogd_ : (THR78) (ILE112) [view usage] : d.117.1.1 |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.70, e.8, e.3, c.69, a.102, d.117, c.66, b.40, c.47, i.5, b.1, b.145, a.4, a.3, a.55, c.118, e.29, a.287, a.250, d.302,
b.20