Tableau information
Concept source: d1pd5l_ amino acid (a.a.) range (ILE41)(GLU108)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HHEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ILE41) (LYS52) H1
(PHE55) (ALA69) H2
(ASP86) (GLN98) E3
(GLU100) (GLU108) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 124.9° H2
E3 -72.6° 155.1° E3
E4 83.6° -49.5° 154.6°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1f60a3 : (LYS36) (ALA92) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |Elongation factor eEF-1alpha, N-terminal (G) domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2btya1 : (PRO64) (LYS132) [view usage] : c.73.1.2 |Carbamate kinase-like |Carbamate kinase-like |N-acetyl-l-glutamate kinase |N-acetyl-l-glutamate kinase |Thermotoga maritima [TaxId: 2336]
d4a2ud1 : (SER17) (PHE38) [view usage] : b.82.3.0 |Double-stranded beta-helix |cAMP-binding domain-like |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d3u9fd_ : (ILE41) (GLU108) [view usage] : c.43.1.1 |CoA-dependent acyltransferases |CoA-dependent acyltransferases |CAT-like |Chloramphenicol acetyltransferase, CAT |Escherichia coli [TaxId: 562]
d4bnqb_ : (GLY81) (THR134) [view usage] : c.51.4.0 |Anticodon-binding domain-like |ITPase-like |automated matches |automated matches |Staphylococcus aureus [TaxId: 46170]
d4dwqa_ : (ALA447) (GLY481) [view usage] : d.261.1.1 |Hypothetical protein PH1602 |Hypothetical protein PH1602 |Hypothetical protein PH1602 |Hypothetical protein PH1602 |Pyrococcus horikoshii [TaxId: 53953]
d1c8nc_ : (THR222) (GLU268) [view usage] : b.121.4.7 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Tombusviridae-like VP |Necrovirus coat protein |TNV (Tobacco necrosis virus) [TaxId: 12054]
d1ebla2 : (THR268) (LEU314) [view usage] : c.95.1.2 |Thiolase-like |Thiolase-like |Chalcone synthase-like |Ketoacyl-ACP synthase III (FabH) |Escherichia coli [TaxId: 562]
d3b0oa_ : (CYS6) (GLY51) [view usage] : d.2.1.2 |Lysozyme-like |Lysozyme-like |C-type lysozyme |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1q2la2 : (ASP888) (GLU939) [view usage] : d.185.1.1 |LuxS/MPP-like metallohydrolase |LuxS/MPP-like metallohydrolase |MPP-like |Protease III |Escherichia coli [TaxId: 562]
d1u0ma2 : (PHE291) (LEU343) [view usage] : c.95.1.2 |Thiolase-like |Thiolase-like |Chalcone synthase-like |Putative polyketide synthase SCO1206 |Streptomyces coelicolor [TaxId: 1902]
d1pd5e_ : (ILE41) (GLU108) [view usage] : c.43.1.1 |CoA-dependent acyltransferases |CoA-dependent acyltransferases |CAT-like |Chloramphenicol acetyltransferase, CAT |Escherichia coli [TaxId: 562]
d1r4sa1 : (THR57) (HIS118) [view usage] : d.96.1.4 |T-fold |Tetrahydrobiopterin biosynthesis enzymes-like |Urate oxidase (uricase) |Urate oxidase (uricase) |Aspergillus flavus [TaxId: 5059]
d4n72b_ : (ILE433) (VAL509) [view usage] : c.43.1.0 |CoA-dependent acyltransferases |CoA-dependent acyltransferases |automated matches |automated matches |Escherichia coli [TaxId: 83334]
d3u2wa_ : (ALA70) (ALA109) [view usage] : c.68.1.14 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |Glycogenin |Glycogenin |Human (Homo sapiens) [TaxId: 9606]
d3do7b1 : (THR142) (ASP219) [view usage] : b.2.5.3 |Common fold of diphtheria toxin/transcription factors/cytochrome f |p53-like transcription factors |Rel/Dorsal transcription factors, DNA-binding domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2fa1b_ : (TRP156) (SER187) [view usage] : d.190.1.2 |Chorismate lyase-like |Chorismate lyase-like |UTRA domain |Probable transcriptional regulator PhnF, receptor domain |Escherichia coli [TaxId: 562]
d1s1ie_ : (PHE20) (ILE65) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1q23j_ : (ILE41) (GLU108) [view usage] : c.43.1.1 |CoA-dependent acyltransferases |CoA-dependent acyltransferases |CAT-like |Chloramphenicol acetyltransferase, CAT |Escherichia coli [TaxId: 562]
d4dwra_ : (ALA447) (LYS480) [view usage] : d.261.1.1 |Hypothetical protein PH1602 |Hypothetical protein PH1602 |Hypothetical protein PH1602 |automated matches |Pyrococcus horikoshii [TaxId: 53953]
d1t1ua2 : (THR414) (ARG463) [view usage] : c.43.1.3 |CoA-dependent acyltransferases |CoA-dependent acyltransferases |Choline/Carnitine O-acyltransferase |Choline O-acetyltransferase |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3n6la_ : (CYS291) (PRO336) [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |automated matches |Human enterovirus 71 [TaxId: 39054]
d2b24b_ : (THR517) (GLY570) [view usage] : d.17.4.4 |Cystatin-like |NTF2-like |Ring hydroxylating beta subunit |automated matches |Rhodococcus sp. [TaxId: 92694]
d3ov2a2 : (LEU324) (PRO388) [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Curcuma longa [TaxId: 136217]
d4ir8b_ : (SER9) (THR61) [view usage] : e.7.1.0 |Carbohydrate phosphatase |Carbohydrate phosphatase |automated matches |automated matches |Toxoplasma gondii [TaxId: 508771]
d2fa1a1 : (TRP156) (SER187) [view usage] : d.190.1.2 |Chorismate lyase-like |Chorismate lyase-like |UTRA domain |Probable transcriptional regulator PhnF, receptor domain |Escherichia coli [TaxId: 562]
d2dsrg1 : (SER152) (CYS207) [view usage] : g.28.1.1 |Thyroglobulin type-1 domain |Thyroglobulin type-1 domain |Thyroglobulin type-1 domain |Insulin-like growth factor-binding protein 4, IGFBP4 |Human (Homo sapiens) [TaxId: 9606]
d1eucb2 : (LYS163) (PHE225) [view usage] : d.142.1.4 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |Succinyl-CoA synthetase, beta-chain, N-terminal domain |Succinyl-CoA synthetase, beta-chain, N-terminal domain |Pig (Sus scrofa) [TaxId: 9823]
d3t7ma_ : (ALA70) (ALA109) [view usage] : c.68.1.14 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |Glycogenin |Glycogenin |Human (Homo sapiens) [TaxId: 9606]
d1q23a_ : (ILE41) (GLU108) [view usage] : c.43.1.1 |CoA-dependent acyltransferases |CoA-dependent acyltransferases |CAT-like |Chloramphenicol acetyltransferase, CAT |Escherichia coli [TaxId: 562]
d1g7ca3 : (LYS36) (GLY94) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |Elongation factor eEF-1alpha, N-terminal (G) domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1rsci_ : (GLU13) (PRO50) [view usage] : d.73.1.1 |RuBisCO, small subunit |RuBisCO, small subunit |RuBisCO, small subunit |Ribulose 1,5-bisphosphate carboxylase-oxygenase |Synechococcus sp., strain pcc 6301 [TaxId: 1131]
d1rbli_ : (GLU13) (PRO50) [view usage] : d.73.1.1 |RuBisCO, small subunit |RuBisCO, small subunit |RuBisCO, small subunit |Ribulose 1,5-bisphosphate carboxylase-oxygenase |Synechococcus sp., strain pcc 6301 [TaxId: 1131]
d1ni0a_ : (ASP30) (HIS83) [view usage] : c.52.1.6 |Restriction endonuclease-like |Restriction endonuclease-like |Restriction endonuclease PvuII |Restriction endonuclease PvuII |Proteus vulgaris [TaxId: 585]
d4n72a_ : (ILE433) (VAL509) [view usage] : c.43.1.0 |CoA-dependent acyltransferases |CoA-dependent acyltransferases |automated matches |automated matches |Escherichia coli [TaxId: 83334]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, b.82, i.1, c.68, c.37, d.185, d.2, c.95, b.121, d.261, b.2, d.96, e.7, c.43, c.73, d.17, c.51, d.142, c.52, d.73,
g.28, d.190