Protein Concepts Dictionary

Tableau information

Concept source:  d2hszb_  amino acid (a.a.) range (VAL100)(SER139)

nSSEs in this Concept: 4

String of secondary struct.elems. (SSEs) defining this concept: HEHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (VAL100)  (GLY111) H1
	  (ILE113)  (ASN119) E2
	  (PRO121)  (GLY133) H3
	  (ILE134)  (SER139) H4

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                          
E2      134.4°   E2                   
H3      -93.5°  132.0°   H3            
H4       35.4° -103.8°  121.5°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±11.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d4pica_ :    (LYS69)   (LYS99)   [view usage] : c.44.1.0 |Phosphotyrosine protein phosphatases I-like |Phosphotyrosine protein phosphatases I |automated matches |automated matches |Geobacillus stearothermophilus [TaxId: 1422]
 d1qyia_ :   (VAL217)  (GLU259)   [view usage] : c.108.1.13 |HAD-like |HAD-like |Hypothetical protein MW1667 (SA1546) |Hypothetical protein MW1667 (SA1546) |Staphylococcus aureus [TaxId: 1280]
 d2pkfa_ :   (SER178)  (ILE217)   [view usage] : c.72.1.0 |Ribokinase-like |Ribokinase-like |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
 d2a9sb_ :     (GLY6)   (ALA49)   [view usage] : c.51.5.1 |Anticodon-binding domain-like |CinA-like |CinA-like |automated matches |Agrobacterium tumefaciens [TaxId: 176299]
 d2dawa1 :    (SER86)  (LEU143)   [view usage] : d.20.1.3 |UBC-like |UBC-like |RWD domain |RWD domain-containing protein 2 |Human (Homo sapiens) [TaxId: 9606]
 d4bi6a_ :   (LYS159)  (ILE209)   [view usage] : c.1.1.0 |TIM beta/alpha-barrel |Triosephosphate isomerase (TIM) |automated matches |automated matches |Giardia intestinalis [TaxId: 5741]
 d4bi5a_ :   (SER158)  (ILE209)   [view usage] : c.1.1.0 |TIM beta/alpha-barrel |Triosephosphate isomerase (TIM) |automated matches |automated matches |Giardia intestinalis [TaxId: 5741]
 d2a9sa1 :     (GLY6)   (ALA49)   [view usage] : c.51.5.1 |Anticodon-binding domain-like |CinA-like |CinA-like |Competence/damage-inducible protein CinA |Agrobacterium tumefaciens [TaxId: 358]
 d1ltkc_ :   (LYS349)  (SER389)   [view usage] : c.86.1.1 |Phosphoglycerate kinase |Phosphoglycerate kinase |Phosphoglycerate kinase |Phosphoglycerate kinase |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
 d4egsa_ :    (GLU73)  (LYS103)   [view usage] : c.44.1.0 |Phosphotyrosine protein phosphatases I-like |Phosphotyrosine protein phosphatases I |automated matches |automated matches |Thermoanaerobacter tengcongensis [TaxId: 273068]
 d1hjqa_ :   (ASN149)  (ASP207)   [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Beta-1,4-galactanase |Fungus (Humicola insolens) [TaxId: 34413]
 d2gi4a_ :    (GLN76)  (LYS106)   [view usage] : c.44.1.0 |Phosphotyrosine protein phosphatases I-like |Phosphotyrosine protein phosphatases I |automated matches |automated matches |Campylobacter jejuni [TaxId: 197]
 d3b1cd_ :   (GLU178)  (PHE225)   [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Streptococcus anginosus [TaxId: 1328]
 d2onra_ :   (TRP134)  (VAL180)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Molybdate-binding protein, ModA |Archaeoglobus fulgidus [TaxId: 2234]
 d1hjsa_ :   (TRP150)  (ASP207)   [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Beta-1,4-galactanase |Thielavia heterothallica, aka Myceliophthora thermophila [TaxId: 78579]
 d1poy1_ :   (SER150)  (VAL206)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Spermidine/putrescine-binding protein PotD |Escherichia coli [TaxId: 562]
 d1r1na_ :   (SER120)  (TYR168)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Ferric-binding protein FbpA |Neisseria gonorrhoeae [TaxId: 485]
 d1amfa_ :   (TRP106)  (LEU146)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Molybdate-binding protein, ModA |Escherichia coli [TaxId: 562]
 d1fhla_ :   (TYR151)  (ASP208)   [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Beta-1,4-galactanase |Fungus (Aspergillus aculeatus) [TaxId: 5053]
 d4bf7a_ :   (TYR151)  (ASP208)   [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |automated matches |Emericella nidulans [TaxId: 162425]
 d2e18a_ :     (ASP5)   (LEU52)   [view usage] : c.26.2.0 |Adenine nucleotide alpha hydrolase-like |Adenine nucleotide alpha hydrolases-like |automated matches |automated matches |Pyrococcus horikoshii [TaxId: 70601]
 d2p51a_ :   (GLU142)  (PHE199)   [view usage] : c.55.3.0 |Ribonuclease H-like motif |Ribonuclease H-like |automated matches |automated matches |Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
 d1d9ya_ :   (SER120)  (GLU167)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Ferric-binding protein FbpA |Neisseria gonorrhoeae [TaxId: 485]
 d3zk3a_ :   (SER233)  (THR271)   [view usage] : c.92.2.4 |Chelatase-like |"Helical backbone" metal receptor |TM0189-like |Enterochelin uptake protein CeuE |Campylobacter jejuni [TaxId: 197]
 d3k1za_ :   (GLY116)  (ASP155)   [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   c.1,    c.67,    c.94,   c.108,    c.26,    c.92,    c.72,    c.55,    c.86,    d.20,    c.51,    c.44