Tableau information
Concept source: d3owoa_ amino acid (a.a.) range (SER18)(GLY59)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HEHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(SER18) (GLY30) H1
(LYS32) (SER38) E2
(ALA40) (GLY46) H3
(GLY46) (GLY59) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 146.8° E2
H3 -92.9° 114.0° H3
H4 -40.3° 168.1° -68.3°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1fyva_ : (SER678) (HIS716) [view usage] : c.23.2.1 |Flavodoxin-like |Toll/Interleukin receptor TIR domain |Toll/Interleukin receptor TIR domain |Toll-like receptor 1, TLR1 |Human (Homo sapiens) [TaxId: 9606]
d3exfb1 : (THR4) (TYR47) [view usage] : c.36.1.7 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |Branched-chain alpha-keto acid dehydrogenase Pyr module |E1-beta subunit of pyruvate dehydrogenase, Pyr module |Human (Homo sapiens) [TaxId: 9606]
d3d0cb_ : (PRO199) (GLU230) [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Oceanobacillus iheyensis [TaxId: 221109]
d1hkva2 : (GLY190) (GLU241) [view usage] : c.1.6.1 |TIM beta/alpha-barrel |PLP-binding barrel |Alanine racemase-like, N-terminal domain |Diaminopimelate decarboxylase LysA |Mycobacterium tuberculosis [TaxId: 1773]
d3d0ca_ : (PRO199) (GLY231) [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Oceanobacillus iheyensis [TaxId: 221109]
d4ioja_ : (SER284) (GLY322) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |automated matches |Moorella thermoacetica [TaxId: 264732]
d3hu5a_ : (GLU116) (ASP151) [view usage] : c.33.1.0 |Isochorismatase-like hydrolases |Isochorismatase-like hydrolases |automated matches |automated matches |Desulfovibrio vulgaris [TaxId: 882]
d3dufb1 : (MET5) (GLY48) [view usage] : c.36.1.0 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |automated matches |automated matches |Bacillus stearothermophilus [TaxId: 1422]
d2jlme_ : (LEU107) (GLY146) [view usage] : d.108.1.0 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |automated matches |automated matches |Acinetobacter baylyi [TaxId: 202950]
d2wmyf_ : (THR73) (ALA101) [view usage] : c.44.1.0 |Phosphotyrosine protein phosphatases I-like |Phosphotyrosine protein phosphatases I |automated matches |automated matches |Escherichia coli [TaxId: 562]
d4v19s_ : (VAL122) (GLY168) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, mitochondrial (54S or 39S subunit) |Pig (Sus scrofa) [TaxId: 9823]
d4tx6b_ : (THR287) (HIS337) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Aspergillus fumigatus [TaxId: 451804]
d2bisb_ : (PRO179) (GLU209) [view usage] : c.87.1.8 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Glycosyl transferases group 1 |automated matches |Pyrococcus abyssi [TaxId: 29292]
d3e27a_ : (THR85) (TRP116) [view usage] : c.26.1.3 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Adenylyltransferase |automated matches |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
d1ehib1 : (ILE485) (ASP519) [view usage] : c.30.1.2 |PreATP-grasp domain |PreATP-grasp domain |D-Alanine ligase N-terminal domain |D-alanine:D-lactate ligase VanA, N-domain |Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]
d2wmyb_ : (THR73) (ALA101) [view usage] : c.44.1.0 |Phosphotyrosine protein phosphatases I-like |Phosphotyrosine protein phosphatases I |automated matches |automated matches |Escherichia coli [TaxId: 562]
d2xtka_ : (THR287) (LEU336) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Aspergillus fumigatus [TaxId: 451804]
d2wmyd_ : (THR73) (ALA101) [view usage] : c.44.1.0 |Phosphotyrosine protein phosphatases I-like |Phosphotyrosine protein phosphatases I |automated matches |automated matches |Escherichia coli [TaxId: 562]
d4jimb_ : (SER284) (GLY322) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |automated matches |Moorella thermoacetica [TaxId: 1525]
d2o28b_ : (GLN132) (LYS167) [view usage] : d.108.1.0 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2bi4a_ : (GLY17) (THR52) [view usage] : e.22.1.2 |Dehydroquinate synthase-like |Dehydroquinate synthase-like |Iron-containing alcohol dehydrogenase |automated matches |Escherichia coli [TaxId: 562]
d2xtkb_ : (PRO288) (LEU336) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Aspergillus fumigatus [TaxId: 451804]
d3owod_ : (SER18) (ALA57) [view usage] : e.22.1.0 |Dehydroquinate synthase-like |Dehydroquinate synthase-like |automated matches |automated matches |Zymomonas mobilis [TaxId: 542]
d1eg7b_ : (ILE1285) (GLY1322) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Formyltetrahydrofolate synthetase |Moorella thermoacetica [TaxId: 1525]
d3froa_ : (PRO179) (GLU209) [view usage] : c.87.1.8 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Glycosyl transferases group 1 |automated matches |Pyrococcus abyssi [TaxId: 29292]
d1r3ua_ : (THR14) (ILE58) [view usage] : c.61.1.1 |PRTase-like |PRTase-like |Phosphoribosyltransferases (PRTases) |Hypoxanthine-guanine PRTase (HGPRTase) |Thermoanaerobacter tengcongensis [TaxId: 119072]
d2x19a_ : (LYS134) (GLY172) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3gbua_ : (TRP119) (ILE151) [view usage] : c.72.1.0 |Ribokinase-like |Ribokinase-like |automated matches |automated matches |Pyrococcus horikoshii [TaxId: 70601]
d4g71a_ : (ILE250) (GLY328) [view usage] : f.24.1.1 |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Bacterial ba3 type cytochrome c oxidase subunit I |Thermus thermophilus [TaxId: 274]
d1u5ha_ : (ALA96) (ALA126) [view usage] : c.1.12.5 |TIM beta/alpha-barrel |Phosphoenolpyruvate/pyruvate domain |HpcH/HpaI aldolase |Citrate lyase, beta subunit |Mycobacterium tuberculosis [TaxId: 1773]
d1fp7a_ : (ILE1285) (GLY1322) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Formyltetrahydrofolate synthetase |Moorella thermoacetica [TaxId: 1525]
d2i9ka_ : (ASP95) (LEU143) [view usage] : c.66.1.26 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |C5 cytosine-specific DNA methylase, DCM |DNA methylase HhaI |Haemophilus haemolyticus [TaxId: 726]
d1yr6a1 : (LYS80) (LEU122) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |ATP(GTP)-binding protein PAB0955 |Pyrococcus abyssi [TaxId: 29292]
d2fyic_ : (HIS86) (LEU118) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |LysR-type regulatory protein Cbl |Escherichia coli [TaxId: 562]
d4nr0c_ : (ASP70) (LYS131) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
d2nyva_ : (GLU87) (ASP127) [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Aquifex aeolicus [TaxId: 63363]
d3c8nc_ : (GLY298) (ARG334) [view usage] : c.1.16.0 |TIM beta/alpha-barrel |Bacterial luciferase-like |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d1vkoa2 : (GLY316) (SER367) [view usage] : d.81.1.3 |FwdE/GAPDH domain-like |Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain |Dihydrodipicolinate reductase-like |Myo-inositol 1-phosphate synthase |Nematode (Caenorhabditis elegans) [TaxId: 6239]
d3q3va_ : (GLU129) (ASP165) [view usage] : c.86.1.0 |Phosphoglycerate kinase |Phosphoglycerate kinase |automated matches |automated matches |Campylobacter jejuni [TaxId: 192222]
d1yfzb_ : (THR14) (ILE58) [view usage] : c.61.1.1 |PRTase-like |PRTase-like |Phosphoribosyltransferases (PRTases) |Xanthine-guanine PRTase (XPRTase) |Thermoanaerobacter tengcongensis [TaxId: 119072]
d1i7da_ : (THR82) (GLN120) [view usage] : e.10.1.1 |Prokaryotic type I DNA topoisomerase |Prokaryotic type I DNA topoisomerase |Prokaryotic type I DNA topoisomerase |DNA topoisomerase III |Escherichia coli [TaxId: 562]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.94, c.2, i.1, c.108, c.26, c.66, e.22, c.72, c.23, c.37, c.36, c.86, c.87, d.81, d.108, f.24, c.33, c.61, c.30,
c.44, e.10