Tableau information
Concept source: d3llda_ amino acid (a.a.) range (ASN23)(ARG62)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HEHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASN23) (ARG35) H1
(ASP39) (TYR45) E2
(TYR45) (GLU51) H3
(ASP54) (ARG62) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 159.3° E2
H3 -130.2° -70.1° H3
H4 -31.5° 164.7° 103.6°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1ygya4 : (ASN321) (PHE374) [view usage] : d.81.2.2 |FwdE/GAPDH domain-like |Serine metabolism enzymes domain |SerA intervening domain-like |D-3-phosphoglycerate dehydrogenase SerA |Mycobacterium tuberculosis [TaxId: 1773]
d2hsab_ : (THR323) (LEU357) [view usage] : c.1.4.1 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |FMN-linked oxidoreductases |automated matches |Solanum lycopersicum [TaxId: 4081]
d2aqwa1 : (SER77) (ASN133) [view usage] : c.1.2.3 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |Decarboxylase |Protozoan orotidine monophosphate decarboxylase |Plasmodium yoelii [TaxId: 5861]
d1e3xa2 : (LYS344) (LYS392) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Bacterial alpha-amylase |Chimera (Bacillus amyloliquefaciens) and (Bacillus licheniformis) [TaxId: 1390]
d1wy5a2 : (ASN218) (ILE275) [view usage] : d.229.1.1 |MesJ substrate recognition domain-like |MesJ substrate recognition domain-like |MesJ substrate recognition domain-like |TilS-like protein Aq_1887 |Aquifex aeolicus [TaxId: 63363]
d1xc3a2 : (ALA199) (ASN250) [view usage] : c.55.1.10 |Ribonuclease H-like motif |Actin-like ATPase domain |ROK |Putative fructokinase YhdR |Bacillus subtilis [TaxId: 1423]
d2c4ea_ : (SER169) (GLU206) [view usage] : c.72.1.0 |Ribokinase-like |Ribokinase-like |automated matches |automated matches |Methanococcus jannaschii [TaxId: 2190]
d3bpwb_ : (GLU78) (ASN130) [view usage] : c.1.2.3 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |Decarboxylase |Protozoan orotidine monophosphate decarboxylase |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
d1rp0a1 : (ASP217) (GLY275) [view usage] : c.3.1.6 |FAD/NAD(P)-binding domain |FAD/NAD(P)-binding domain |Thi4-like |Thiazole biosynthetic enzyme Thi4 |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1mioa_ : (GLY119) (ILE165) [view usage] : c.92.2.3 |Chelatase-like |"Helical backbone" metal receptor |Nitrogenase iron-molybdenum protein |Nitrogenase iron-molybdenum protein, alpha chain |Clostridium pasteurianum [TaxId: 1501]
d2od5a1 : (THR7) (ASP57) [view usage] : a.4.5.70 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Marine metagenome family WH1 |Hypothetical protein GOS_3836187 |Environmental samples
d2bv9a1 : (LYS232) (ALA282) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Endoglucanase H N-terminal domain |Clostridium thermocellum [TaxId: 1515]
d1rp8a2 : (VAL306) (GLY347) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Plant alpha-amylase |Barley (Hordeum vulgare), AMY1 isozyme [TaxId: 4513]
d4ovja_ : (SER182) (GLY251) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Alicyclobacillus acidocaldarius [TaxId: 521098]
d4gita_ : (THR494) (ILE559) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |ATPase domain of protease Lon (La) |Brevibacillus thermoruber [TaxId: 33942]
d2fkmx1 : (PRO10) (GLY47) [view usage] : c.84.1.1 |Phosphoglucomutase, first 3 domains |Phosphoglucomutase, first 3 domains |Phosphoglucomutase, first 3 domains |Phosphomannomutase/phosphoglucomutase |Pseudomonas aeruginosa [TaxId: 287]
d1h16a_ : (ASN250) (VAL315) [view usage] : c.7.1.1 |PFL-like glycyl radical enzymes |PFL-like glycyl radical enzymes |PFL-like |Pyruvate formate-lyase, PFL |Escherichia coli [TaxId: 562]
d1ds9a_ : (ASN129) (LYS171) [view usage] : c.10.3.1 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |Outer arm dynein light chain 1 |Outer arm dynein light chain 1 |Outer arm dynein light chain 1 |Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]
d3rw7d_ : (SER305) (PHE345) [view usage] : c.10.2.3 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |mRNA export factor tap |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4mrqa1 : (PRO10) (GLY47) [view usage] : c.84.1.0 |Phosphoglucomutase, first 3 domains |Phosphoglucomutase, first 3 domains |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
d4h2ea_ : (SER219) (LEU267) [view usage] : d.92.1.11 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Matrix metalloproteases, catalytic domain |Gelatinase B (MMP-9) |Human (Homo sapiens) [TaxId: 9606]
d2if2a_ : (GLU77) (ASP125) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Aquifex aeolicus [TaxId: 224324]
d1vpqa_ : (SER213) (GLU258) [view usage] : c.1.32.1 |TIM beta/alpha-barrel |TM1631-like |TM1631-like |Hypothetical protein TM1631 |Thermotoga maritima [TaxId: 2336]
d1m34a_ : (GLY127) (LEU174) [view usage] : c.92.2.3 |Chelatase-like |"Helical backbone" metal receptor |Nitrogenase iron-molybdenum protein |Nitrogenase iron-molybdenum protein, alpha chain |Azotobacter vinelandii [TaxId: 354]
d4dhla2 : (TRP179) (ARG222) [view usage] : d.159.1.1 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |Purple acid phosphatase-like |automated matches |French bean (Phaseolus vulgaris) [TaxId: 3885]
d1k2yx1 : (PRO10) (GLY47) [view usage] : c.84.1.1 |Phosphoglucomutase, first 3 domains |Phosphoglucomutase, first 3 domains |Phosphoglucomutase, first 3 domains |Phosphomannomutase/phosphoglucomutase |Pseudomonas aeruginosa [TaxId: 287]
d1ztvb_ : (ASN218) (ASN263) [view usage] : c.1.32.1 |TIM beta/alpha-barrel |TM1631-like |TM1631-like |automated matches |Enterococcus faecalis [TaxId: 226185]
d1khha_ : (THR145) (GLY200) [view usage] : c.66.1.16 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Guanidinoacetate methyltransferase |Guanidinoacetate methyltransferase |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2iqqa1 : (SER15) (ASN70) [view usage] : d.81.2.1 |FwdE/GAPDH domain-like |Serine metabolism enzymes domain |Serine dehydratase beta chain-like |L-serine dehydratase SdhL, N-terminal domain |Legionella pneumophila [TaxId: 446]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.10, c.94, d.159, c.92, c.66, d.92, c.72, c.37, c.7, c.55, d.81, a.4, c.3, c.84, d.229