Tableau information
Concept source: d2gwfa_ amino acid (a.a.) range (THR272)(THR313)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HEHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(THR272) (LEU281) H1
(PRO294) (GLY299) E2
(TYR301) (CYS307) H3
(TYR308) (THR313) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 158.2° E2
H3 97.6° 60.9° H3
H4 67.0° -122.4° -113.7°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1wy5a1 : (SER104) (GLY157) [view usage] : c.26.2.5 |Adenine nucleotide alpha hydrolase-like |Adenine nucleotide alpha hydrolases-like |PP-loop ATPase |TilS-like protein Aq_1887 |Aquifex aeolicus [TaxId: 63363]
d1nrza_ : (ASP41) (GLU78) [view usage] : c.38.1.1 |PTS IIb component |PTS IIb component |PTS IIb component |Sorbose permease subunit IIb , EIIb-sor |Klebsiella pneumoniae [TaxId: 573]
d4czma2 : (GLY301) (SER344) [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Caulobacter vibrioides [TaxId: 155892]
d4dqqa2 : (LEU630) (ASP678) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |automated matches |Geobacillus kaustophilus [TaxId: 235909]
d1mmla_ : (PRO132) (ALA169) [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |MMLV reverse transcriptase |Moloney murine leukemia virus, MoMLV [TaxId: 11801]
d4aoua_ : (THR310) (GLY367) [view usage] : c.77.1.0 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |automated matches |automated matches |Clostridium thermocellum [TaxId: 1515]
d2gwfe_ : (THR272) (THR313) [view usage] : c.46.1.4 |Rhodanese/Cell cycle control phosphatase |Rhodanese/Cell cycle control phosphatase |Ubiquitin carboxyl-terminal hydrolase 8, USP8 |Ubiquitin carboxyl-terminal hydrolase 8, USP8 |Human (Homo sapiens) [TaxId: 9606]
d1vytb2 : (PRO277) (LYS313) [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |Guanylate kinase-like domain of the L-type calcium channel |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2gwfc_ : (THR272) (THR313) [view usage] : c.46.1.4 |Rhodanese/Cell cycle control phosphatase |Rhodanese/Cell cycle control phosphatase |Ubiquitin carboxyl-terminal hydrolase 8, USP8 |Ubiquitin carboxyl-terminal hydrolase 8, USP8 |Human (Homo sapiens) [TaxId: 9606]
d2b0ta_ : (PRO583) (GLU640) [view usage] : c.77.1.2 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Monomeric isocitrate dehydrogenase |automated matches |Corynebacterium glutamicum [TaxId: 1718]
d1xdia2 : (GLN369) (GLU396) [view usage] : d.87.1.1 |CO dehydrogenase flavoprotein C-domain-like |FAD/NAD-linked reductases, dimerisation (C-terminal) domain |FAD/NAD-linked reductases, dimerisation (C-terminal) domain |Dihydrolipoamide dehydrogenase |Mycobacterium tuberculosis [TaxId: 1773]
d4ez9a2 : (LEU630) (ASP678) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |automated matches |Geobacillus kaustophilus [TaxId: 1462]
d1jila_ : (ILE103) (ARG138) [view usage] : c.26.1.1 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Class I aminoacyl-tRNA synthetases (RS), catalytic domain |Tyrosyl-tRNA synthetase (TyrRS) |Staphylococcus aureus [TaxId: 1280]
d1l1ea_ : (SER207) (ILE253) [view usage] : c.66.1.18 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Mycolic acid cyclopropane synthase |PccA |Mycobacterium tuberculosis [TaxId: 1773]
d1n06b_ : (GLY37) (ARG60) [view usage] : b.43.5.1 |Reductase/isomerase/elongation factor common domain |Riboflavin kinase-like |ATP-dependent riboflavin kinase-like |Riboflavin kinase |Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
d1h0ka2 : (SER309) (GLY348) [view usage] : c.2.1.1 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Alcohol dehydrogenase-like, C-terminal domain |2,4-dienoyl-CoA reductase |Yeast (Candida tropicalis) [TaxId: 5482]
d4f1va_ : (THR1123) (LYS1158) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Phosphate-binding protein |Pseudomonas fluorescens [TaxId: 216595]
d4dqpd2 : (LEU630) (ASP678) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |automated matches |Geobacillus kaustophilus [TaxId: 235909]
d3kt6b_ : (ASN166) (GLY214) [view usage] : c.26.1.1 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Class I aminoacyl-tRNA synthetases (RS), catalytic domain |Tryptophanyl-tRNA synthetase (TrpRS) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2iwya1 : (GLY78) (SER114) [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3j6vf_ : (THR72) (TYR118) [view usage] : i.1.1.3 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Small subunit |Eukaryotic, mitochondrial (28S subunit) |Cow (Bos taurus) [TaxId: 9913]
d2fk8a_ : (SER216) (THR263) [view usage] : c.66.1.18 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Mycolic acid cyclopropane synthase |Methoxy mycolic acid synthase 4, Mma4 |Mycobacterium tuberculosis [TaxId: 1773]
d2o57c_ : (SER213) (ALA257) [view usage] : c.66.1.18 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Mycolic acid cyclopropane synthase |Putative sarcosine dimethylglycine methyltransferase |Red algae (Galdieria sulphuraria) [TaxId: 130081]
d1aoda_ : (GLN25) (THR59) [view usage] : c.1.18.2 |TIM beta/alpha-barrel |PLC-like phosphodiesterases |Bacterial PLC |Phosphatidylinositol-specific phospholipase C |Listeria monocytogenes [TaxId: 1639]
d3kt3b_ : (ASN166) (GLY214) [view usage] : c.26.1.1 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Class I aminoacyl-tRNA synthetases (RS), catalytic domain |Tryptophanyl-tRNA synthetase (TrpRS) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3dc0a1 : (ASP132) (ASP168) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |automated matches |Bacillus sp. [TaxId: 535911]
d1q7ma2 : (ASN3) (PRO43) [view usage] : c.1.26.1 |TIM beta/alpha-barrel |Homocysteine S-methyltransferase |Homocysteine S-methyltransferase |Cobalamin-dependent methionine synthase MetH, N-terminal domain |Thermotoga maritima [TaxId: 2336]
d1n06a_ : (GLY37) (ARG60) [view usage] : b.43.5.1 |Reductase/isomerase/elongation factor common domain |Riboflavin kinase-like |ATP-dependent riboflavin kinase-like |Riboflavin kinase |Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
d1xr6a_ : (ASP213) (SER258) [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |Viral RNA polymerase |Human rhinovirus 1B, HRV-1B [TaxId: 12129]
d2yvaa_ : (THR51) (GLU97) [view usage] : c.80.1.3 |SIS domain |SIS domain |mono-SIS domain |automated matches |Escherichia coli [TaxId: 562]
d2ocea5 : (SER395) (PHE437) [view usage] : c.55.3.13 |Ribonuclease H-like motif |Ribonuclease H-like |Tex RuvX-like domain-like |Transcriptional accessory factor Tex |Pseudomonas aeruginosa [TaxId: 287]
d1kp9a_ : (SER207) (LEU253) [view usage] : c.66.1.18 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Mycolic acid cyclopropane synthase |CmaA1 |Mycobacterium tuberculosis [TaxId: 1773]
d1s4fa_ : (SER270) (GLN308) [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |Viral RNA polymerase |Bovine viral diarrhea virus [TaxId: 11099]
d1n25a_ : (PRO534) (ARG567) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |Papillomavirus large T antigen helicase domain |Simian virus 40 [TaxId: 10633]
d2pjra1 : (THR91) (LEU155) [view usage] : c.37.1.19 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Tandem AAA-ATPase domain |DEXX box DNA helicase |Bacillus stearothermophilus, PcrA [TaxId: 1422]
d2o57b_ : (SER213) (ALA257) [view usage] : c.66.1.18 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Mycolic acid cyclopropane synthase |Putative sarcosine dimethylglycine methyltransferase |Red algae (Galdieria sulphuraria) [TaxId: 130081]
d2ecpa_ : (TRP475) (SER506) [view usage] : c.87.1.4 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Oligosaccharide phosphorylase |Maltodextrin phosphorylase (MALP) |Escherichia coli [TaxId: 562]
d1t3la2 : (PRO327) (HIS364) [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |Guanylate kinase-like domain of the L-type calcium channel |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
d2gwfa_ : (THR272) (THR313) [view usage] : c.46.1.4 |Rhodanese/Cell cycle control phosphatase |Rhodanese/Cell cycle control phosphatase |Ubiquitin carboxyl-terminal hydrolase 8, USP8 |Ubiquitin carboxyl-terminal hydrolase 8, USP8 |Human (Homo sapiens) [TaxId: 9606]
d3l07a2 : (VAL247) (GLN278) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Francisella tularensis [TaxId: 177416]
d3cf1a2 : (GLY250) (SER282) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |Membrane fusion ATPase VCP/p97 |Mouse (Mus musculus) [TaxId: 10090]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, c.1, c.94, c.2, i.1, c.26, c.66, c.80, c.77, c.37, c.55, c.95, c.87, d.87, c.38, b.43, c.46