Tableau information
Concept source: d1bqca_ amino acid (a.a.) range (ALA204)(SER255)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HEHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ALA204) (GLY218) H1
(GLY218) (HIS228) E2
(ASP236) (LEU247) H3
(LEU249) (SER255) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 -153.7° E2
H3 -19.6° -153.2° H3
E4 134.0° -25.6° -146.5°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1iz1b2 : (ASP225) (ARG258) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |LysR-type regulatory protein CbnR |Ralstonia eutropha [TaxId: 106590]
d1usga_ : (SER86) (ALA118) [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |Leucine-binding protein |Escherichia coli [TaxId: 562]
d3asva_ : (LEU118) (GLY178) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Escherichia coli [TaxId: 562]
d1p9ba_ : (PRO69) (SER110) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Adenylosuccinate synthetase, PurA |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
d1cg4a_ : (PRO56) (ALA102) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Adenylosuccinate synthetase, PurA |Escherichia coli [TaxId: 562]
d1cg1a_ : (PRO56) (ALA102) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Adenylosuccinate synthetase, PurA |Escherichia coli [TaxId: 562]
d3gpba_ : (GLY677) (GLY712) [view usage] : c.87.1.4 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Oligosaccharide phosphorylase |Glycogen phosphorylase |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
d2acvb_ : (GLN342) (LEU374) [view usage] : c.87.1.10 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |UDPGT-like |Triterpene UDP-glucosyl transferase UGT71G1 |Medicago truncatula [TaxId: 3880]
d1m3ea2 : (ASN261) (GLU305) [view usage] : c.124.1.3 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |CoA transferase beta subunit-like |Succinate:CoA transferase, C-terminal domain |Pig (Sus scrofa) [TaxId: 9823]
d1tiwa2 : (ASN488) (THR545) [view usage] : c.1.23.2 |TIM beta/alpha-barrel |FAD-linked oxidoreductase |Proline dehydrohenase domain of bifunctional PutA protein |Proline dehydrohenase domain of bifunctional PutA protein |Escherichia coli [TaxId: 562]
d1o4wa_ : (PRO89) (LYS124) [view usage] : c.120.1.1 |PIN domain-like |PIN domain-like |PIN domain |Hypothetical protein AF0591 |Archaeoglobus fulgidus [TaxId: 2234]
d1cg3a_ : (PRO56) (ALA102) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Adenylosuccinate synthetase, PurA |Escherichia coli [TaxId: 562]
d4rk0d_ : (GLU116) (ASP156) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Enterococcus faecalis [TaxId: 226185]
d2q2qd_ : (LEU123) (TRP184) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |automated matches |Pseudomonas putida [TaxId: 303]
d3n26a_ : (LEU82) (PRO112) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Chlamydophila pneumoniae [TaxId: 83558]
d4k68b_ : (GLY34) (PRO75) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |automated matches |Soil metagenome [TaxId: 410658]
d2yivx_ : (SER312) (MET353) [view usage] : e.26.1.2 |Prismane protein-like |Prismane protein-like |Carbon monoxide dehydrogenase |Ni-containing carbon monoxide dehydrogenase |Carboxydothermus hydrogenoformans [TaxId: 129958]
d3t4xa_ : (VAL118) (SER186) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
d1m2xc_ : (GLY124) (ASP175) [view usage] : d.157.1.1 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |Zn metallo-beta-lactamase |Zn metallo-beta-lactamase |Chryseobacterium meningosepticum, carbapenemase BLAB-1 [TaxId: 238]
d3w24a_ : (ASP8) (ALA47) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Thermoanaerobacterium saccharolyticum [TaxId: 1094508]
d1oaoa_ : (GLN337) (ALA375) [view usage] : e.26.1.2 |Prismane protein-like |Prismane protein-like |Carbon monoxide dehydrogenase |Bifunctional carbon monoxide dehydrogenase/acetyl-CoA synthase (CODH/ACS) beta (CODH) subunit |Moorella thermoacetica [TaxId: 1525]
d3vzpc_ : (ASP125) (TYR185) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Cupriavidus necator [TaxId: 381666]
d1iz1a2 : (ASP225) (GLY261) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |LysR-type regulatory protein CbnR |Ralstonia eutropha [TaxId: 106590]
d3p1tc_ : (SER152) (GLU187) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Burkholderia pseudomallei [TaxId: 28450]
d2yv2a1 : (PRO80) (GLY127) [view usage] : c.2.1.8 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |CoA-binding domain |Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain |Aeropyrum pernix [TaxId: 272557]
d2r2na_ : (SER210) (PHE261) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ghta_ : (LYS46) (ILE93) [view usage] : c.53.1.1 |Resolvase-like |Resolvase-like |gamma,delta resolvase, catalytic domain |gamma,delta resolvase, catalytic domain |Escherichia coli [TaxId: 562]
d1om0a_ : (TYR136) (THR188) [view usage] : c.1.8.5 |TIM beta/alpha-barrel |(Trans)glycosidases |Type II chitinase |Xylanase inhibitor protein I, XIP-I |Wheat (Triticum aestivum) [TaxId: 4565]
d1e0da1 : (ASP59) (GLY93) [view usage] : c.5.1.1 |MurCD N-terminal domain |MurCD N-terminal domain |MurCD N-terminal domain |UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD |Escherichia coli [TaxId: 562]
d1g25a_ : (THR12) (PHE63) [view usage] : g.44.1.1 |RING/U-box |RING/U-box |RING finger domain, C3HC4 |TFIIH Mat1 subunit |Human (Homo sapiens) [TaxId: 9606]
d2q01a_ : (LYS341) (PRO383) [view usage] : c.1.9.0 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |automated matches |automated matches |Caulobacter vibrioides [TaxId: 190650]
d1su6a_ : (SER312) (MET353) [view usage] : e.26.1.2 |Prismane protein-like |Prismane protein-like |Carbon monoxide dehydrogenase |Ni-containing carbon monoxide dehydrogenase |Carboxydothermus hydrogenoformans [TaxId: 129958]
d1pn3a_ : (ASN279) (ARG313) [view usage] : c.87.1.5 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Gtf glycosyltransferase |TDP-epi-vancosaminyltransferase GtfA |Amycolatopsis orientalis [TaxId: 31958]
d1sxjb2 : (ILE93) (CYS144) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |Replication factor C4 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1j6ua3 : (SER189) (GLY225) [view usage] : c.72.2.1 |Ribokinase-like |MurD-like peptide ligases, catalytic domain |MurCDEF |UDP-N-acetylmuramate-alanine ligase MurC |Thermotoga maritima [TaxId: 2336]
d1m2xa_ : (GLY124) (ASP175) [view usage] : d.157.1.1 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |Zn metallo-beta-lactamase |Zn metallo-beta-lactamase |Chryseobacterium meningosepticum, carbapenemase BLAB-1 [TaxId: 238]
d1gdha1 : (ASN246) (PRO286) [view usage] : c.2.1.4 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Formate/glycerate dehydrogenases, NAD-domain |D-glycerate dehydrogenase |Hyphomicrobium methylovorum [TaxId: 84]
d1poy1_ : (ASN216) (TRP247) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Spermidine/putrescine-binding protein PotD |Escherichia coli [TaxId: 562]
d3p1td_ : (SER152) (GLU187) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Burkholderia pseudomallei [TaxId: 28450]
d1sh7b_ : (THR135) (SER181) [view usage] : c.41.1.0 |Subtilisin-like |Subtilisin-like |automated matches |automated matches |Vibrio sp. [TaxId: 210249]
d3niya_ : (SER21) (PRO63) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |automated matches |Thermotoga petrophila [TaxId: 390874]
d1m3eb2 : (ASN261) (GLU305) [view usage] : c.124.1.3 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |CoA transferase beta subunit-like |Succinate:CoA transferase, C-terminal domain |Pig (Sus scrofa) [TaxId: 9823]
d1ixca2 : (ASP225) (ARG258) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |LysR-type regulatory protein CbnR |Ralstonia eutropha [TaxId: 106590]
d2g8lb_ : (SER224) (LEU260) [view usage] : e.50.1.1 |AF1104-like |AF1104-like |AF1104-like |Hypothetical protein PH1575 |Pyrococcus horikoshii [TaxId: 53953]
d3p5mb_ : (THR70) (PRO117) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Mycobacterium avium [TaxId: 243243]
d4k29a_ : (GLY77) (THR127) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Xanthobacter autotrophicus [TaxId: 78245]
d2fyia1 : (SER227) (ASP260) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |LysR-type regulatory protein Cbl |Escherichia coli [TaxId: 562]
d2ie3c1 : (LYS74) (ARG115) [view usage] : d.159.1.3 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |Protein serine/threonine phosphatase |Protein phosphatase 2A catalytic subunit alpha isoform, PP2A-alpha |Human (Homo sapiens) [TaxId: 9606]
d2iema_ : (SER106) (ALA174) [view usage] : d.58.28.1 |Ferredoxin-like |Peptide methionine sulfoxide reductase |Peptide methionine sulfoxide reductase |Peptide methionine sulfoxide reductase |Escherichia coli [TaxId: 562]
d3f7oa_ : (ALA149) (SER188) [view usage] : c.41.1.0 |Subtilisin-like |Subtilisin-like |automated matches |automated matches |Paecilomyces lilacinus [TaxId: 33203]
d2fyic_ : (SER227) (THR261) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |LysR-type regulatory protein Cbl |Escherichia coli [TaxId: 562]
d1f8gb1 : (GLY181) (ASP222) [view usage] : c.2.1.4 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Formate/glycerate dehydrogenases, NAD-domain |Nicotinamide nucleotide transhydrogenase dI component |Rhodospirillum rubrum [TaxId: 1085]
d1v19a_ : (VAL41) (HIS78) [view usage] : c.72.1.1 |Ribokinase-like |Ribokinase-like |Ribokinase-like |2-keto-3-deoxygluconate kinase |Thermus thermophilus [TaxId: 274]
d4i5lc_ : (LYS74) (ARG115) [view usage] : d.159.1.3 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |Protein serine/threonine phosphatase |Protein phosphatase 2A catalytic subunit alpha isoform, PP2A-alpha |Human (Homo sapiens) [TaxId: 9606]
d4k29b_ : (GLY77) (THR127) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Xanthobacter autotrophicus [TaxId: 78245]
d1yf3a1 : (GLU187) (ASN236) [view usage] : c.66.1.28 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |N6 adenine-specific DNA methylase, DAM |DNA methylase T4DAM |Bacteriophage T4 [TaxId: 10665]
d1pzxb_ : (LEU73) (ASP118) [view usage] : c.119.1.1 |DAK1/DegV-like |DAK1/DegV-like |DegV-like |Hypothetical protein apc36103 |Bacillus stearothermophilus [TaxId: 1422]
d1ixcb2 : (ASP225) (ARG258) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |LysR-type regulatory protein CbnR |Ralstonia eutropha [TaxId: 106590]
d1byra_ : (PRO40) (SER88) [view usage] : d.136.1.1 |Phospholipase D/nuclease |Phospholipase D/nuclease |Nuclease |Nuclease Nuc |Salmonella typhimurium [TaxId: 90371]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.67, c.94, c.2, d.159, d.58, d.157, c.66, c.124, c.93, c.14, c.72, c.37, c.87, c.53, c.41, c.120, e.26, c.119, d.136,
c.5, e.50, g.44