Tableau information
Concept source: d2yceb_ amino acid (a.a.) range (ASP183)(ARG232)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HEHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASP183) (ALA194) H1
(PRO198) (GLY204) E2
(GLU211) (ALA223) H3
(LEU226) (ARG232) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 136.7° E2
H3 -43.2° 160.4° H3
E4 115.7° -22.7° 154.5°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±11.8° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2bm9b_ : (ASP66) (ARG117) [view usage] : c.66.1.50 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |CmcI-like |Cephalosporin hydroxylase CmcI |Streptomyces clavuligerus [TaxId: 1901]
d1z88a1 : (LYS93) (ASP147) [view usage] : c.108.1.12 |HAD-like |HAD-like |Class B acid phosphatase, AphA |Class B acid phosphatase, AphA |Salmonella typhimurium [TaxId: 90371]
d4m9ce_ : (SER52) (SER95) [view usage] : b.81.1.0 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |automated matches |automated matches |Acinetobacter baumannii [TaxId: 470]
d3igxa_ : (SER4) (PRO37) [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Francisella tularensis [TaxId: 177416]
d1ytub1 : (PHE93) (ARG140) [view usage] : c.55.3.10 |Ribonuclease H-like motif |Ribonuclease H-like |PIWI domain |Hypothetical protein AF1318 |Archaeoglobus fulgidus [TaxId: 2234]
d2f48b_ : (THR151) (PRO202) [view usage] : c.89.1.1 |Phosphofructokinase |Phosphofructokinase |Phosphofructokinase |automated matches |Borrelia burgdorferi [TaxId: 224326]
d1b0ma1 : (VAL616) (LYS662) [view usage] : c.8.2.1 |The "swivelling" beta/beta/alpha domain |LeuD/IlvD-like |LeuD-like |Aconitase A, C-terminal domain |Pig (Sus scrofa) [TaxId: 9823]
d2pf0a_ : (GLN78) (LEU134) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |automated matches |Yeast (Candida albicans) [TaxId: 5476]
d3uk0a_ : (VAL202) (THR245) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Rhodopseudomonas palustris [TaxId: 316057]
d2im5a2 : (PRO279) (THR332) [view usage] : c.1.17.2 |TIM beta/alpha-barrel |Nicotinate/Quinolinate PRTase C-terminal domain-like |Monomeric nicotinate phosphoribosyltransferase C-terminal domain |Nicotinate phosphoribosyltransferase, C-terminal domain |Porphyromonas gingivalis [TaxId: 837]
d2pboa_ : (GLN78) (LEU134) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |automated matches |Yeast (Candida albicans) [TaxId: 5476]
d1i2na_ : (ASP3) (PRO36) [view usage] : c.1.10.1 |TIM beta/alpha-barrel |Aldolase |Class I aldolase |Transaldolase |Escherichia coli [TaxId: 562]
d1vjoa_ : (VAL169) (SER205) [view usage] : c.67.1.3 |PLP-dependent transferase-like |PLP-dependent transferases |Cystathionine synthase-like |Alanine-glyoxylate aminotransferase |Nostoc sp. PCC 7120 [TaxId: 103690]
d1bd0a2 : (LEU14) (ALA65) [view usage] : c.1.6.1 |TIM beta/alpha-barrel |PLP-binding barrel |Alanine racemase-like, N-terminal domain |Alanine racemase |Bacillus stearothermophilus [TaxId: 1422]
d1dqra_ : (ASP234) (TRP266) [view usage] : c.80.1.2 |SIS domain |SIS domain |Phosphoglucose isomerase, PGI |Phosphoglucose isomerase, PGI |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
d2g0wa1 : (GLU120) (THR173) [view usage] : c.1.15.4 |TIM beta/alpha-barrel |Xylose isomerase-like |IolI-like |Hypothetical protein Lmo2234 |Listeria monocytogenes [TaxId: 1639]
d1tc1b_ : (THR14) (SER81) [view usage] : c.61.1.1 |PRTase-like |PRTase-like |Phosphoribosyltransferases (PRTases) |Hypoxanthine PRTase |Trypanosoma cruzi [TaxId: 5693]
d3oojc2 : (ASP451) (ALA498) [view usage] : c.80.1.1 |SIS domain |SIS domain |double-SIS domain |automated matches |Escherichia coli [TaxId: 562]
d2f96a1 : (GLN103) (ALA164) [view usage] : c.55.3.5 |Ribonuclease H-like motif |Ribonuclease H-like |DnaQ-like 3'-5' exonuclease |Ribonuclease T |Pseudomonas aeruginosa [TaxId: 287]
d4m9cb_ : (SER52) (SER95) [view usage] : b.81.1.0 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |automated matches |automated matches |Acinetobacter baumannii [TaxId: 470]
d1sg4b_ : (SER75) (ASP126) [view usage] : c.14.1.3 |ClpP/crotonase |ClpP/crotonase |Crotonase-like |Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) |Human (Homo sapiens) [TaxId: 9606]
d3sn2a2 : (ASP751) (GLU798) [view usage] : c.8.2.0 |The "swivelling" beta/beta/alpha domain |LeuD/IlvD-like |automated matches |automated matches |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
d3onca_ : (ALA57) (ILE109) [view usage] : c.1.7.1 |TIM beta/alpha-barrel |NAD(P)-linked oxidoreductase |Aldo-keto reductases (NADP) |Aldose reductase (aldehyde reductase) |Human (Homo sapiens) [TaxId: 9606]
d3kkea_ : (ARG104) (ASN147) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
d4n0qb_ : (PHE204) (GLY247) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Brucella melitensis [TaxId: 224914]
d4eb5b_ : (ALA174) (ARG212) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Archaeoglobus fulgidus [TaxId: 224325]
d4l4pa_ : (LEU225) (TRP297) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Caldicellulosiruptor bescii [TaxId: 521460]
d3q94a_ : (GLY191) (THR234) [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Bacillus anthracis [TaxId: 261594]
d3w02a_ : (SER20) (SER67) [view usage] : c.1.4.1 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |FMN-linked oxidoreductases |PcrB protein homolog YerE |Staphylococcus aureus [TaxId: 418127]
d2zwya1 : (PRO107) (SER173) [view usage] : c.1.8.11 |TIM beta/alpha-barrel |(Trans)glycosidases |Putative alpha-L-fucosidase, catalytic domain |automated matches |Thermotoga maritima [TaxId: 2336]
d2zwya1 : (THR198) (ASN252) [view usage] : c.1.8.11 |TIM beta/alpha-barrel |(Trans)glycosidases |Putative alpha-L-fucosidase, catalytic domain |automated matches |Thermotoga maritima [TaxId: 2336]
d4o8ma_ : (VAL196) (LEU229) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Actinobacillus succinogenes [TaxId: 339671]
d1cjbc_ : (ASP131) (LEU173) [view usage] : c.61.1.1 |PRTase-like |PRTase-like |Phosphoribosyltransferases (PRTases) |Hypoxanthine-guanine PRTase (HGPRTase) |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
d1zy9a2 : (ALA209) (PHE261) [view usage] : c.1.8.13 |TIM beta/alpha-barrel |(Trans)glycosidases |YicI catalytic domain-like |Alpha-galactosidase GalA catalytic domain |Thermotoga maritima [TaxId: 2336]
d3tk7a_ : (SER4) (PRO37) [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Francisella tularensis [TaxId: 119856]
d3igxb_ : (SER4) (PRO37) [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Francisella tularensis [TaxId: 177416]
d2cdna_ : (SER61) (VAL115) [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |Adenylate kinase |Mycobacterium tuberculosis [TaxId: 1773]
d1gv4a2 : (SER322) (ASN365) [view usage] : c.3.1.5 |FAD/NAD(P)-binding domain |FAD/NAD(P)-binding domain |FAD/NAD-linked reductases, N-terminal and central domains |Apoptosis-inducing factor (AIF) |Mouse (Mus musculus) [TaxId: 10090]
d3a4ya_ : (GLY382) (PHE425) [view usage] : d.157.1.10 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |beta-CASP RNA-metabolising hydrolases |Putative RNA-degradation protein TTHA0252 |Thermus thermophilus [TaxId: 274]
d1bg6a2 : (HIS88) (SER136) [view usage] : c.2.1.6 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |6-phosphogluconate dehydrogenase-like, N-terminal domain |N-(1-D-carboxylethyl)-L-norvaline dehydrogenase |Arthrobacter, strain 1c [TaxId: 1663]
d2z1aa2 : (ASP190) (HIS238) [view usage] : d.159.1.2 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain |5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain |Thermus thermophilus [TaxId: 274]
d3gg7a_ : (TRP38) (GLU84) [view usage] : c.1.9.0 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |automated matches |automated matches |Deinococcus radiodurans [TaxId: 1299]
d1z0kc_ : (ARG71) (GLY120) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |Rab4a |Human (Homo sapiens) [TaxId: 9606]
d1cqxa3 : (GLU355) (VAL395) [view usage] : c.25.1.5 |Ferredoxin reductase-like, C-terminal NADP-linked domain |Ferredoxin reductase-like, C-terminal NADP-linked domain |Flavohemoglobin, C-terminal domain |Flavohemoglobin, C-terminal domain |Alcaligenes eutrophus [TaxId: 106590]
d1f05a_ : (SER13) (ASN45) [view usage] : c.1.10.1 |TIM beta/alpha-barrel |Aldolase |Class I aldolase |Transaldolase |Human (Homo sapiens) [TaxId: 9606]
d1z5ga1 : (LYS93) (ASP147) [view usage] : c.108.1.12 |HAD-like |HAD-like |Class B acid phosphatase, AphA |Class B acid phosphatase, AphA |Salmonella typhimurium [TaxId: 90371]
d3i2ea_ : (HIS173) (PRO215) [view usage] : d.126.1.0 |Pentein, beta/alpha-propeller |Pentein |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2bz0b_ : (THR131) (VAL173) [view usage] : c.144.1.1 |RibA-like |RibA-like |RibA-like |GTP cyclohydrolase II, RibA |Escherichia coli [TaxId: 562]
d2yzrb_ : (PRO63) (SER103) [view usage] : c.1.2.0 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |automated matches |automated matches |Methanocaldococcus jannaschii [TaxId: 243232]
d1azya2 : (ILE183) (GLN244) [view usage] : c.27.1.1 |Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain |Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain |Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain |Thymidine phosphorylase |Escherichia coli [TaxId: 562]
d2bz1a_ : (THR131) (VAL173) [view usage] : c.144.1.1 |RibA-like |RibA-like |RibA-like |GTP cyclohydrolase II, RibA |Escherichia coli [TaxId: 562]
d4m9ca_ : (SER52) (SER95) [view usage] : b.81.1.0 |Single-stranded left-handed beta-helix |Trimeric LpxA-like enzymes |automated matches |automated matches |Acinetobacter baumannii [TaxId: 470]
d5acna1 : (VAL616) (LYS662) [view usage] : c.8.2.1 |The "swivelling" beta/beta/alpha domain |LeuD/IlvD-like |LeuD-like |Aconitase A, C-terminal domain |Pig (Sus scrofa) [TaxId: 9823]
d1iq8a1 : (ILE214) (ALA251) [view usage] : c.1.20.1 |TIM beta/alpha-barrel |tRNA-guanine transglycosylase |tRNA-guanine transglycosylase |Archaeosine tRNA-guanine transglycosylase, N-terminal domain |Pyrococcus horikoshii [TaxId: 53953]
d3anxa_ : (THR56) (ASP108) [view usage] : c.66.1.17 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Spermidine synthase |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d4eb5a_ : (ALA174) (ARG212) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Archaeoglobus fulgidus [TaxId: 224325]
d1i8ja_ : (ASN224) (VAL271) [view usage] : c.1.10.3 |TIM beta/alpha-barrel |Aldolase |5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) |5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) |Escherichia coli [TaxId: 562]
d2m6ka_ : (ALA105) (ASN143) [view usage] : c.92.2.0 |Chelatase-like |"Helical backbone" metal receptor |automated matches |automated matches |Escherichia coli [TaxId: 83333]
d2br5a_ : (PRO67) (ARG117) [view usage] : c.66.1.50 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |CmcI-like |Cephalosporin hydroxylase CmcI |Streptomyces clavuligerus [TaxId: 1901]
d3idza_ : (GLY382) (PHE425) [view usage] : d.157.1.10 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |beta-CASP RNA-metabolising hydrolases |Putative RNA-degradation protein TTHA0252 |Thermus thermophilus [TaxId: 274]
d3kofa_ : (LYS4) (PRO36) [view usage] : c.1.10.1 |TIM beta/alpha-barrel |Aldolase |Class I aldolase |automated matches |Escherichia coli K-12 [TaxId: 83333]
d2auta_ : (LYS93) (ASP147) [view usage] : c.108.1.12 |HAD-like |HAD-like |Class B acid phosphatase, AphA |Class B acid phosphatase, AphA |Salmonella typhimurium [TaxId: 90371]
d2e1db_ : (SER13) (PRO46) [view usage] : c.1.10.1 |TIM beta/alpha-barrel |Aldolase |Class I aldolase |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d4hqva_ : (GLU208) (LEU259) [view usage] : c.1.20.1 |TIM beta/alpha-barrel |tRNA-guanine transglycosylase |tRNA-guanine transglycosylase |Queosine tRNA-guanine transglycosylase |Zymomonas mobilis [TaxId: 264203]
d3ryha2 : (SER287) (TYR357) [view usage] : d.79.2.1 |Bacillus chorismate mutase-like |Tubulin C-terminal domain-like |Tubulin, C-terminal domain |automated matches |Sheep (Ovis aries) [TaxId: 9940]
d2xh8a_ : (ALA216) (ASP260) [view usage] : c.92.2.0 |Chelatase-like |"Helical backbone" metal receptor |automated matches |automated matches |Salmonella enterica [TaxId: 90371]
d1d6na_ : (PRO37) (PHE98) [view usage] : c.61.1.1 |PRTase-like |PRTase-like |Phosphoribosyltransferases (PRTases) |Hypoxanthine-guanine PRTase (HGPRTase) |Human (Homo sapiens) [TaxId: 9606]
d1diia2 : (LEU110) (SER153) [view usage] : d.145.1.1 |FAD-binding/transporter-associated domain-like |FAD-binding/transporter-associated domain-like |FAD-linked oxidases, N-terminal domain |Flavoprotein subunit of p-cresol methylhydroxylase |Pseudomonas putida [TaxId: 303]
d2depb_ : (VAL272) (TRP343) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Clostridium stercorarium [TaxId: 1510]
d1eh9a3 : (LYS124) (VAL189) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Glycosyltrehalose trehalohydrolase, central domain |Sulfolobus solfataricus, km1 [TaxId: 2287]
d1ehaa3 : (LYS124) (VAL189) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Glycosyltrehalose trehalohydrolase, central domain |Sulfolobus solfataricus, km1 [TaxId: 2287]
d2depa_ : (VAL272) (TRP343) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Clostridium stercorarium [TaxId: 1510]
d2e1da_ : (SER13) (PRO46) [view usage] : c.1.10.1 |TIM beta/alpha-barrel |Aldolase |Class I aldolase |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d3uora_ : (VAL248) (PRO290) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Xanthomonas axonopodis [TaxId: 190486]
d1gz5a_ : (ARG99) (LEU153) [view usage] : c.87.1.6 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Trehalose-6-phosphate synthase, OtsA |Trehalose-6-phosphate synthase, OtsA |Escherichia coli [TaxId: 562]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.67, b.81, c.94, c.2, d.159, c.108, c.92, d.157, c.66, c.80, c.93, c.14, c.37, c.55, c.89, c.87, d.126, c.8, c.25,
c.61, d.79, d.145, c.3, c.27, c.144