Tableau information
Concept source: d3hgma_ amino acid (a.a.) range (PRO98)(VAL147)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HEHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(PRO98) (GLU110) H1
(ASP112) (GLY117) E2
(GLY130) (ALA140) H3
(CYS142) (VAL147) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 151.5° E2
H3 -35.0° -163.7° H3
E4 126.4° -25.3° -150.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.7° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1cgwa4 : (ASN204) (VAL262) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Cyclodextrin glycosyltransferase |Bacillus circulans, different strains [TaxId: 1397]
d3ga5a_ : (GLY74) (GLY109) [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |Galactose/glucose-binding protein |Salmonella typhimurium, strain lt2 [TaxId: 90371]
d1llqa2 : (LYS245) (ASP295) [view usage] : c.58.1.3 |Aminoacid dehydrogenase-like, N-terminal domain |Aminoacid dehydrogenase-like, N-terminal domain |Malic enzyme N-domain |Mitochondrial NAD(P)-dependent malic enzyme |Pig roundworm (Ascaris suum) [TaxId: 6253]
d4bp0a_ : (ASN81) (SER130) [view usage] : d.157.1.0 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d1ynya2 : (PRO214) (CYS264) [view usage] : c.1.9.6 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Hydantoinase (dihydropyrimidinase), catalytic domain |D-hydantoinase |Bacillus sp. AR9 [TaxId: 301298]
d4jnza2 : (TYR350) (GLN404) [view usage] : c.1.23.2 |TIM beta/alpha-barrel |FAD-linked oxidoreductase |Proline dehydrohenase domain of bifunctional PutA protein |Proline dehydrohenase domain of bifunctional PutA protein |Escherichia coli K-12 [TaxId: 83333]
d4jnza2 : (ASN488) (GLY544) [view usage] : c.1.23.2 |TIM beta/alpha-barrel |FAD-linked oxidoreductase |Proline dehydrohenase domain of bifunctional PutA protein |Proline dehydrohenase domain of bifunctional PutA protein |Escherichia coli K-12 [TaxId: 83333]
d4koda3 : (GLY280) (ALA346) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4kode3 : (GLY280) (ALA346) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4ppya_ : (HIS124) (ASP190) [view usage] : c.23.10.0 |Flavodoxin-like |SGNH hydrolase |automated matches |automated matches |Bacteroides fragilis [TaxId: 272559]
d3hmua_ : (PRO199) (GLU262) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Silicibacter pomeroyi [TaxId: 89184]
d1mv8a3 : (ASP383) (LEU419) [view usage] : c.26.3.1 |Adenine nucleotide alpha hydrolase-like |UDP-glucose/GDP-mannose dehydrogenase C-terminal domain |UDP-glucose/GDP-mannose dehydrogenase C-terminal domain |GDP-mannose 6-dehydrogenase, GDP-binding domain |Pseudomonas aeruginosa [TaxId: 287]
d2d3wa_ : (ASN143) (VAL201) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Escherichia coli [TaxId: 562]
d2b0ta_ : (ASP459) (LEU515) [view usage] : c.77.1.2 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Monomeric isocitrate dehydrogenase |automated matches |Corynebacterium glutamicum [TaxId: 1718]
d1uuqa_ : (ARG61) (PHE131) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Exomannosidase |Cellvibrio mixtus [TaxId: 39650]
d2yhka_ : (LEU160) (ALA215) [view usage] : c.67.1.2 |PLP-dependent transferase-like |PLP-dependent transferases |Beta-eliminating lyases |automated matches |Citrobacter freundii [TaxId: 546]
d1o20a_ : (ASN126) (ASN180) [view usage] : c.82.1.1 |ALDH-like |ALDH-like |ALDH-like |Gamma-glutamyl phosphate reductase |Thermotoga maritima [TaxId: 2336]
d1vjra_ : (THR95) (THR146) [view usage] : c.108.1.14 |HAD-like |HAD-like |NagD-like |Hypothetical protein TM1742 |Thermotoga maritima [TaxId: 2336]
d1tv7a_ : (ALA145) (GLU195) [view usage] : c.1.28.3 |TIM beta/alpha-barrel |Radical SAM enzymes |MoCo biosynthesis proteins |Molybdenum cofactor biosynthesis protein A MoaA |Staphylococcus aureus [TaxId: 1280]
d2qs8a2 : (GLU87) (ALA140) [view usage] : c.1.9.18 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Zn-dependent arginine carboxypeptidase-like |Xaa-Pro dipeptidase |Alteromonas macleodii [TaxId: 28108]
d3o0da_ : (HIS126) (GLY188) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Yarrowia lipolytica [TaxId: 4952]
d2b0aa1 : (LEU112) (ASN149) [view usage] : c.8.8.1 |The "swivelling" beta/beta/alpha domain |Putative cyclase |Putative cyclase |Hypothetical protein MJ0783 |Methanococcus jannaschii [TaxId: 2190]
d1ny5a2 : (GLY225) (ASN280) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |Transcriptional activator sigm54 (NtrC1), C-terminal domain |Aquifex aeolicus [TaxId: 63363]
d1jdwa_ : (ILE304) (PRO340) [view usage] : d.126.1.2 |Pentein, beta/alpha-propeller |Pentein |Amidinotransferase |L-arginine: glycine amidinotransferase |Human (Homo sapiens) [TaxId: 9606]
d1gz4a2 : (GLN229) (ASP279) [view usage] : c.58.1.3 |Aminoacid dehydrogenase-like, N-terminal domain |Aminoacid dehydrogenase-like, N-terminal domain |Malic enzyme N-domain |Mitochondrial NAD(P)-dependent malic enzyme |Human (Homo sapiens) [TaxId: 9606]
d1o9la2 : (ASN300) (GLU344) [view usage] : c.124.1.3 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |CoA transferase beta subunit-like |Succinate:CoA transferase, C-terminal domain |Pig (Sus scrofa) [TaxId: 9823]
d2zk7b_ : (ILE116) (THR176) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Thermoplasma acidophilum [TaxId: 2303]
d1kcxa2 : (GLU229) (ILE279) [view usage] : c.1.9.6 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Hydantoinase (dihydropyrimidinase), catalytic domain |Dihydropyrimidinase related protein-1 |Mouse (Mus musculus) [TaxId: 10090]
d3e2qa2 : (TYR350) (GLN404) [view usage] : c.1.23.2 |TIM beta/alpha-barrel |FAD-linked oxidoreductase |Proline dehydrohenase domain of bifunctional PutA protein |automated matches |Escherichia coli K-12 [TaxId: 83333]
d3e2qa2 : (ASN488) (THR545) [view usage] : c.1.23.2 |TIM beta/alpha-barrel |FAD-linked oxidoreductase |Proline dehydrohenase domain of bifunctional PutA protein |automated matches |Escherichia coli K-12 [TaxId: 83333]
d2pjua1 : (SER89) (TYR135) [view usage] : c.92.3.1 |Chelatase-like |PrpR receptor domain-like |PrpR receptor domain-like |Propionate catabolism operon regulatory protein PrpR |Escherichia coli [TaxId: 562]
d1j6oa_ : (ARG16) (VAL58) [view usage] : c.1.9.12 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |TatD Mg-dependent DNase-like |Hypothetical protein TM0667 |Thermotoga maritima [TaxId: 2336]
d2jdxa_ : (ILE304) (PRO340) [view usage] : d.126.1.2 |Pentein, beta/alpha-propeller |Pentein |Amidinotransferase |L-arginine: glycine amidinotransferase |Human (Homo sapiens) [TaxId: 9606]
d4bp0b_ : (ASN81) (SER130) [view usage] : d.157.1.0 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d3ouub1 : (ILE64) (ILE104) [view usage] : c.30.1.0 |PreATP-grasp domain |PreATP-grasp domain |automated matches |automated matches |Campylobacter jejuni [TaxId: 192222]
d4ppyb_ : (HIS124) (ASP190) [view usage] : c.23.10.0 |Flavodoxin-like |SGNH hydrolase |automated matches |automated matches |Bacteroides fragilis [TaxId: 272559]
d2xvxa_ : (SER66) (LEU119) [view usage] : c.92.1.0 |Chelatase-like |Chelatase |automated matches |automated matches |Desulfovibrio vulgaris [TaxId: 882]
d2i6ea1 : (THR139) (LEU190) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Hypothetical protein DR0370 |Deinococcus radiodurans [TaxId: 1299]
d1tv7b_ : (THR146) (GLU195) [view usage] : c.1.28.3 |TIM beta/alpha-barrel |Radical SAM enzymes |MoCo biosynthesis proteins |Molybdenum cofactor biosynthesis protein A MoaA |Staphylococcus aureus [TaxId: 1280]
d1twia2 : (SER50) (SER105) [view usage] : c.1.6.1 |TIM beta/alpha-barrel |PLP-binding barrel |Alanine racemase-like, N-terminal domain |Diaminopimelate decarboxylase LysA |Methanococcus jannaschii [TaxId: 2190]
d4wuta_ : (ASN133) (GLN192) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Agrobacterium vitis [TaxId: 311402]
d2ycpa_ : (LEU160) (ALA215) [view usage] : c.67.1.2 |PLP-dependent transferase-like |PLP-dependent transferases |Beta-eliminating lyases |automated matches |Citrobacter freundii [TaxId: 546]
d3riha_ : (LEU140) (ASN202) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Mycobacterium abscessus [TaxId: 561007]
d3d02a_ : (GLU142) (THR188) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Klebsiella pneumoniae [TaxId: 272620]
d1s1i0_ : (ASN78) (THR120) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1gz3a2 : (GLN229) (ASP279) [view usage] : c.58.1.3 |Aminoacid dehydrogenase-like, N-terminal domain |Aminoacid dehydrogenase-like, N-terminal domain |Malic enzyme N-domain |Mitochondrial NAD(P)-dependent malic enzyme |Human (Homo sapiens) [TaxId: 9606]
d1cl2b_ : (ASN92) (TRP131) [view usage] : c.67.1.3 |PLP-dependent transferase-like |PLP-dependent transferases |Cystathionine synthase-like |Cystathionine beta-lyase, CBL |Escherichia coli [TaxId: 562]
d2ji8b3 : (MET432) (MET477) [view usage] : c.36.1.9 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |Pyruvate oxidase and decarboxylase PP module |Oxalyl-CoA decarboxylase |Oxalobacter formigenes [TaxId: 847]
d1zjja_ : (THR68) (THR107) [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Pyrococcus horikoshii [TaxId: 70601]
d3ouza1 : (ILE64) (ILE104) [view usage] : c.30.1.0 |PreATP-grasp domain |PreATP-grasp domain |automated matches |automated matches |Campylobacter jejuni [TaxId: 192222]
d3ieka_ : (GLY382) (PHE425) [view usage] : d.157.1.10 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |beta-CASP RNA-metabolising hydrolases |Putative RNA-degradation protein TTHA0252 |Thermus thermophilus [TaxId: 274]
d4rk5a_ : (HIS160) (ASP214) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Lactobacillus casei [TaxId: 321967]
d3wjaa1 : (SER229) (ASP279) [view usage] : c.58.1.0 |Aminoacid dehydrogenase-like, N-terminal domain |Aminoacid dehydrogenase-like, N-terminal domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1yi8a_ : (TYR150) (ALA199) [view usage] : c.26.1.0 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |automated matches |automated matches |Deinococcus radiodurans [TaxId: 243230]
d1m63a_ : (GLN94) (ARG148) [view usage] : d.159.1.3 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |Protein serine/threonine phosphatase |Protein phosphatase-2B (PP-2B, calcineurin A subunit) |Human (Homo sapiens) [TaxId: 9606]
d2hi6a1 : (GLY64) (ARG105) [view usage] : c.8.2.3 |The "swivelling" beta/beta/alpha domain |LeuD/IlvD-like |AF0055-like |Hypothetical protein AF0055 |Archaeoglobus fulgidus [TaxId: 2234]
d1c14a_ : (SER121) (GLY190) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Enoyl-ACP reductase |Escherichia coli [TaxId: 562]
d4m7ya_ : (THR188) (VAL251) [view usage] : c.55.1.14 |Ribonuclease H-like motif |Actin-like ATPase domain |Fumble-like |automated matches |Staphylococcus aureus [TaxId: 196620]
d1x1oa2 : (ILE117) (ARG162) [view usage] : c.1.17.0 |TIM beta/alpha-barrel |Nicotinate/Quinolinate PRTase C-terminal domain-like |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d2vjya3 : (GLN367) (ASN402) [view usage] : c.36.1.0 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |automated matches |automated matches |Milk yeast (Kluyveromyces lactis) [TaxId: 28985]
d1mg5a_ : (ILE101) (GLY183) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Drosophila alcohol dehydrogenase |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d3hmub_ : (ASP198) (GLU262) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Silicibacter pomeroyi [TaxId: 89184]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.67, c.69, c.94, c.2, d.159, i.1, c.108, c.82, c.26, c.92, d.157, c.77, c.124, c.93, c.23, c.37, c.36, c.55, d.126,
c.8, c.30, c.58