Tableau information
Concept source: d1r8sa_ amino acid (a.a.) range (GLN71)(ASN126)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HEHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLN71) (TYR81) H1
(GLY87) (ASP93) E2
(VAL100) (ALA112) H3
(VAL120) (ASN126) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 149.9° E2
H3 -40.2° 169.8° H3
E4 134.7° -20.5° 162.3°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4heqa_ : (ASP77) (ALA121) [view usage] : c.23.5.1 |Flavodoxin-like |Flavoproteins |Flavodoxin-related |automated matches |Desulfovibrio gigas [TaxId: 879]
d2gcba2 : (THR177) (PHE222) [view usage] : c.72.2.2 |Ribokinase-like |MurD-like peptide ligases, catalytic domain |Folylpolyglutamate synthetase |Folylpolyglutamate synthetase |Lactobacillus casei [TaxId: 1582]
d1zmba1 : (VAL93) (GLY157) [view usage] : c.23.10.7 |Flavodoxin-like |SGNH hydrolase |Putative acetylxylan esterase-like |Acetylxylan esterase related enzyme |Clostridium acetobutylicum [TaxId: 1488]
d2p78a_ : (THR28) (PRO70) [view usage] : c.60.1.1 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |Cofactor-dependent phosphoglycerate mutase |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d4en4a_ : (SER59) (LEU116) [view usage] : c.72.1.5 |Ribokinase-like |Ribokinase-like |PfkB-like kinase |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1a9na_ : (GLY82) (ARG122) [view usage] : c.10.2.4 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |U2A'-like |Splicesomal U2A' protein |Human (Homo sapiens) [TaxId: 9606]
d1nvta1 : (TYR206) (GLY252) [view usage] : c.2.1.7 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Aminoacid dehydrogenase-like, C-terminal domain |Shikimate 5-dehydrogenase AroE |Methanococcus jannaschii [TaxId: 2190]
d1v37a_ : (THR28) (PRO70) [view usage] : c.60.1.1 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |Cofactor-dependent phosphoglycerate mutase |Alpha-ribazole-5'-phosphate phosphatase |Thermus thermophilus [TaxId: 274]
d1keva2 : (HIS222) (ILE265) [view usage] : c.2.1.1 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Alcohol dehydrogenase-like, C-terminal domain |Bacterial secondary alcohol dehydrogenase |Clostridium beijerinckii [TaxId: 1520]
d3k8zc2 : (ALA198) (ALA252) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
d2p9zb_ : (THR28) (PRO70) [view usage] : c.60.1.1 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |Cofactor-dependent phosphoglycerate mutase |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d2gcaa2 : (THR177) (PHE222) [view usage] : c.72.2.2 |Ribokinase-like |MurD-like peptide ligases, catalytic domain |Folylpolyglutamate synthetase |Folylpolyglutamate synthetase |Lactobacillus casei [TaxId: 1582]
d1mfza2 : (ALA164) (THR202) [view usage] : c.2.1.6 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |6-phosphogluconate dehydrogenase-like, N-terminal domain |GDP-mannose 6-dehydrogenase |Pseudomonas aeruginosa [TaxId: 287]
d1hyua3 : (THR4) (THR57) [view usage] : c.47.1.2 |Thioredoxin fold |Thioredoxin-like |PDI-like |Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain |Salmonella typhimurium [TaxId: 90371]
d2f7ka_ : (SER59) (ASP113) [view usage] : c.72.1.5 |Ribokinase-like |Ribokinase-like |PfkB-like kinase |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1lw7a1 : (GLY148) (ASP193) [view usage] : c.26.1.3 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Adenylyltransferase |Transcriptional regulator NadR, NMN-adenylyltransferase domain |Haemophilus influenzae [TaxId: 727]
d1z2wa1 : (PRO19) (VAL59) [view usage] : d.159.1.7 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |YfcE-like |Vacuolar protein sorting 29, VPS29 |Mouse (Mus musculus) [TaxId: 10090]
d2eoaa_ : (THR28) (PRO70) [view usage] : c.60.1.1 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |Cofactor-dependent phosphoglycerate mutase |automated matches |Thermus thermophilus [TaxId: 274]
d4m0kc_ : (LEU47) (ARG84) [view usage] : c.61.1.0 |PRTase-like |PRTase-like |automated matches |automated matches |Rhodothermus marinus [TaxId: 518766]
d1eiza_ : (SER33) (LEU84) [view usage] : c.66.1.2 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |RNA methyltransferase FtsJ |RNA methyltransferase FtsJ |Escherichia coli [TaxId: 562]
d1m8ja_ : (TRP87) (PRO122) [view usage] : c.26.1.3 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Adenylyltransferase |Nicotinamide mononucleotide (NMN) adenylyltransferase |Methanobacterium thermoautotrophicum [TaxId: 145262]
d1bvua1 : (ALA189) (THR244) [view usage] : c.2.1.7 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Aminoacid dehydrogenase-like, C-terminal domain |Glutamate dehydrogenase |Thermococcus litoralis [TaxId: 2265]
d4evia2 : (ASN170) (ASP231) [view usage] : c.66.1.0 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |automated matches |automated matches |Linum nodiflorum [TaxId: 407264]
d1zmbb_ : (VAL93) (GLY157) [view usage] : c.23.10.7 |Flavodoxin-like |SGNH hydrolase |Putative acetylxylan esterase-like |automated matches |Clostridium acetobutylicum [TaxId: 272562]
d3gp5a_ : (THR29) (TRP83) [view usage] : c.60.1.1 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |Cofactor-dependent phosphoglycerate mutase |automated matches |Burkholderia pseudomallei [TaxId: 28450]
d2esra1 : (GLU99) (GLU147) [view usage] : c.66.1.46 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |YhhF-like |Putative methyltransferase SPy1538 |Streptococcus pyogenes [TaxId: 1314]
d4m0ka_ : (LEU47) (ARG84) [view usage] : c.61.1.0 |PRTase-like |PRTase-like |automated matches |automated matches |Rhodothermus marinus [TaxId: 518766]
d3fhxb_ : (SER59) (LEU116) [view usage] : c.72.1.5 |Ribokinase-like |Ribokinase-like |PfkB-like kinase |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2xe6a_ : (PRO143) (GLY186) [view usage] : c.86.1.1 |Phosphoglycerate kinase |Phosphoglycerate kinase |Phosphoglycerate kinase |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4ij6b_ : (SER29) (ASP78) [view usage] : c.60.1.0 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |automated matches |automated matches |Hydrogenobacter thermophilus [TaxId: 608538]
d4bkma_ : (PRO140) (ASN186) [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d3d8ha_ : (GLN50) (TRP102) [view usage] : c.60.1.1 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |Cofactor-dependent phosphoglycerate mutase |automated matches |Cryptosporidium parvum [TaxId: 353152]
d3mxwa_ : (SER70) (GLU126) [view usage] : d.65.1.2 |Hedgehog/DD-peptidase |Hedgehog/DD-peptidase |Hedgehog (development protein), N-terminal signaling domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1vhha_ : (SER71) (GLU127) [view usage] : d.65.1.2 |Hedgehog/DD-peptidase |Hedgehog/DD-peptidase |Hedgehog (development protein), N-terminal signaling domain |Sonic hedgehog |Mouse (Mus musculus) [TaxId: 10090]
d4czea1 : (PHE82) (ASP139) [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Caulobacter vibrioides [TaxId: 155892]
d2f8sa2 : (ASN335) (ILE389) [view usage] : c.55.3.10 |Ribonuclease H-like motif |Ribonuclease H-like |PIWI domain |automated matches |Aquifex aeolicus [TaxId: 63363]
d2g39a2 : (GLU232) (TYR286) [view usage] : c.124.1.2 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |CoA transferase alpha subunit-like |Acetyl-CoA hydrolase (PA5445) |Pseudomonas aeruginosa [TaxId: 287]
d1wd5a_ : (ARG6) (ALA59) [view usage] : c.61.1.1 |PRTase-like |PRTase-like |Phosphoribosyltransferases (PRTases) |Putative phosphoribosyltransferase TT1426 (TTHA1462) |Thermus thermophilus [TaxId: 274]
d1h42a2 : (LYS171) (SER223) [view usage] : c.25.1.1 |Ferredoxin reductase-like, C-terminal NADP-linked domain |Ferredoxin reductase-like, C-terminal NADP-linked domain |Reductases |Ferredoxin reductase (flavodoxin reductase) |Anabaena sp., pcc 7119 [TaxId: 1167]
d4rhab_ : (LYS235) (GLY305) [view usage] : d.79.7.0 |Bacillus chorismate mutase-like |OmpA-like |automated matches |automated matches |Salmonella enterica [TaxId: 99287]
d4pbga_ : (PRO57) (HIS115) [view usage] : c.1.8.4 |TIM beta/alpha-barrel |(Trans)glycosidases |Family 1 of glycosyl hydrolase |6-phospho-beta-D-galactosidase, PGAL |Lactococcus lactis [TaxId: 1358]
d2hlsb1 : (SER10) (TYR71) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Aeropyrum pernix [TaxId: 272557]
d1vpqa_ : (GLU100) (PHE144) [view usage] : c.1.32.1 |TIM beta/alpha-barrel |TM1631-like |TM1631-like |Hypothetical protein TM1631 |Thermotoga maritima [TaxId: 2336]
d4ocnd_ : (ASP69) (ASP124) [view usage] : c.97.3.0 |Cytidine deaminase-like |JAB1/MPN domain |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
d4fshb2 : (ASP105) (ARG149) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Helicobacter pylori [TaxId: 85962]
d1x0va1 : (PRO94) (ALA150) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3ranb_ : (ARG76) (GLY121) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |Ran |Dog (Canis familiaris) [TaxId: 9615]
d3psna_ : (ALA20) (ARG60) [view usage] : d.159.1.7 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |YfcE-like |Vacuolar protein sorting 29, VPS29 |Mouse (Mus musculus) [TaxId: 10090]
d1s1hk_ : (SER55) (VAL120) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3ie0a_ : (GLN383) (PHE425) [view usage] : d.157.1.10 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |beta-CASP RNA-metabolising hydrolases |Putative RNA-degradation protein TTHA0252 |Thermus thermophilus [TaxId: 274]
d1yixa1 : (VAL77) (ASP133) [view usage] : c.1.9.12 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |TatD Mg-dependent DNase-like |Putative deoxyribonuclease YcfH |Escherichia coli [TaxId: 562]
d1z6xa1 : (TRP78) (ASN126) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |ADP-ribosylation factor |Human (Homo sapiens), ARF4 [TaxId: 9606]
d3hvua_ : (SER12) (GLY71) [view usage] : c.61.1.0 |PRTase-like |PRTase-like |automated matches |automated matches |Bacillus anthracis [TaxId: 261594]
d1iv1a_ : (GLU74) (THR133) [view usage] : d.79.5.1 |Bacillus chorismate mutase-like |IpsF-like |IpsF-like |2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF |Thermus thermophilus [TaxId: 274]
d1c4xa_ : (PRO217) (ARG260) [view usage] : c.69.1.10 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Carbon-carbon bond hydrolase |2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) |Rhodococcus sp., strain rha1 [TaxId: 1831]
d1jqba2 : (HIS1222) (ILE1265) [view usage] : c.2.1.1 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Alcohol dehydrogenase-like, C-terminal domain |Bacterial secondary alcohol dehydrogenase |Clostridium beijerinckii [TaxId: 1520]
d1fjgk_ : (THR57) (PRO113) [view usage] : c.55.4.1 |Ribonuclease H-like motif |Translational machinery components |Ribosomal protein L18 and S11 |Ribosomal protein S11 |Thermus thermophilus [TaxId: 274]
d4ocna_ : (ASP69) (VAL123) [view usage] : c.97.3.0 |Cytidine deaminase-like |JAB1/MPN domain |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
d1rfua_ : (SER59) (ASP113) [view usage] : c.72.1.5 |Ribokinase-like |Ribokinase-like |PfkB-like kinase |Pyridoxal kinase |Sheep (Ovis aries) [TaxId: 9940]
d3ie2a_ : (GLN383) (PHE425) [view usage] : d.157.1.10 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |beta-CASP RNA-metabolising hydrolases |Putative RNA-degradation protein TTHA0252 |Thermus thermophilus [TaxId: 274]
d2pmpa_ : (SER77) (THR136) [view usage] : d.79.5.1 |Bacillus chorismate mutase-like |IpsF-like |IpsF-like |2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1v9la1 : (ALA188) (ILE242) [view usage] : c.2.1.7 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Aminoacid dehydrogenase-like, C-terminal domain |Glutamate dehydrogenase |Pyrobaculum islandicum [TaxId: 2277]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.10, c.69, c.2, d.159, i.1, c.108, c.26, d.157, c.66, c.124, c.72, c.23, c.37, c.47, c.55, c.86, c.60, c.97, c.25,
c.61, d.79, d.65