Protein Concepts Dictionary

Tableau information

Concept source:  d4h5fd_  amino acid (a.a.) range (SER90)(ILE124)

nSSEs in this Concept: 4

String of secondary struct.elems. (SSEs) defining this concept: HEHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (SER90)  (GLY101) H1
	  (ASP104)  (GLY109) E2
	  (ASP114)  (PHE120) H3
	  (PHE120)  (ILE124) E4

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                          
E2     -158.2°   E2                   
H3      -29.6°  167.3°   H3            
E4      102.1°  -62.3° -112.3°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.5°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3hv1a_ :    (LYS95)  (GLU125)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Streptococcus thermophilus [TaxId: 264199]
 d3qaxa_ :    (ILE62)   (PRO91)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Chlamydophila pneumoniae [TaxId: 83558]
 d4c0rb_ :    (GLU50)   (ASN84)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Streptococcus mutans [TaxId: 1309]
 d4c0ra_ :    (GLU50)   (ASN84)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Streptococcus mutans [TaxId: 1309]
 d4eq9a_ :    (GLU85)  (ALA119)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Streptococcus pneumoniae [TaxId: 637987]
 d4qsda_ :   (SER244)  (LEU282)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Agrobacterium fabrum [TaxId: 176299]
 d2fyib_ :   (THR130)  (PRO162)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |LysR-type regulatory protein Cbl |Escherichia coli [TaxId: 562]
 d4dz1a_ :    (ALA76)  (GLU110)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Salmonella enterica [TaxId: 28901]
 d3k4ua_ :    (LEU54)   (GLU84)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Wolinella succinogenes [TaxId: 844]
 d1mm6b_ :    (GLY73)  (LYS104)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Glutamate receptor ligand binding core |Norway rat (Rattus norvegicus), GluR2 [TaxId: 10116]
 d1pc3a_ :    (SER65)  (ALA103)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Phosphate-binding protein |Mycobacterium tuberculosis [TaxId: 1773]
 d1p1wa_ :    (GLY73)  (LYS104)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Glutamate receptor ligand binding core |Norway rat (Rattus norvegicus), GluR2 [TaxId: 10116]
 d2gfea_ :    (GLY73)  (LYS104)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Glutamate receptor ligand binding core |Norway rat (Rattus norvegicus), GluR2 [TaxId: 10116]
 d4f3sa_ :    (ALA56)   (GLU90)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Salmonella enterica [TaxId: 90371]
 d2fyia1 :   (THR130)  (PRO162)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |LysR-type regulatory protein Cbl |Escherichia coli [TaxId: 562]
 d2y7ia_ :    (LEU74)  (GLN104)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Salmonella typhimurium [TaxId: 90371]
 d3delb_ :    (ILE86)  (PRO115)   [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Chlamydia trachomatis [TaxId: 813]
 d2z22a_ :   (GLY176)  (ILE210)   [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |automated matches |Yersinia pestis [TaxId: 214092]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.94