Tableau information
Concept source: d3mn1d_ amino acid (a.a.) range (ALA72)(GLY115)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HEHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ALA72) (GLY82) H1
(GLU84) (GLY89) E2
(LYS93) (LEU104) H3
(VAL111) (GLY115) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 167.2° E2
H3 -31.1° 154.1° H3
E4 136.9° -44.7° 156.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1pwua2 : (GLN611) (SER655) [view usage] : d.92.1.14 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Anthrax toxin lethal factor, N- and C-terminal domains |Anthrax toxin lethal factor, N- and C-terminal domains |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
d1i94h_ : (ASP4) (ASP54) [view usage] : d.140.1.1 |Ribosomal protein S8 |Ribosomal protein S8 |Ribosomal protein S8 |Ribosomal protein S8 |Thermus thermophilus [TaxId: 274]
d1ovba_ : (SER145) (VAL205) [view usage] : c.94.1.2 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Transferrin |Ovotransferrin |Duck (Anas platyrhynchos) [TaxId: 8839]
d1a6db2 : (ASP296) (THR333) [view usage] : c.8.5.2 |The "swivelling" beta/beta/alpha domain |GroEL apical domain-like |Group II chaperonin (CCT, TRIC), apical domain |Thermosome, A-domain |Thermoplasma acidophilum, beta chain [TaxId: 2303]
d4bkua_ : (LYS45) (ILE92) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |automated matches |Burkholderia pseudomallei [TaxId: 884204]
d4kqga_ : (THR97) (GLY176) [view usage] : c.39.1.1 |Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) |Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) |Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) |automated matches |Salmonella enterica [TaxId: 99287]
d4m87a_ : (GLU45) (ILE92) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |automated matches |Neisseria meningitidis [TaxId: 272831]
d1vr0a1 : (ALA30) (GLU70) [view usage] : c.148.1.1 |ComB-like |ComB-like |ComB-like |2-phosphosulfolactate phosphatase ComB |Clostridium acetobutylicum [TaxId: 1488]
d3lmna_ : (ILE84) (ARG115) [view usage] : d.324.1.1 |DUSP-like |DUSP-like |DUSP, domain in ubiquitin-specific proteases |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3nh5a_ : (SER165) (PRO231) [view usage] : c.56.5.0 |Phosphorylase/hydrolase-like |Zn-dependent exopeptidases |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1fpra_ : (GLY315) (THR352) [view usage] : c.45.1.2 |(Phosphotyrosine protein) phosphatases II |(Phosphotyrosine protein) phosphatases II |Higher-molecular-weight phosphotyrosine protein phosphatases |Tyrosine phosphatase |Human (Homo sapiens), shp-1 [TaxId: 9606]
d3m84a2 : (ASN234) (ASP274) [view usage] : d.139.1.1 |PurM C-terminal domain-like |PurM C-terminal domain-like |PurM C-terminal domain-like |Aminoimidazole ribonucleotide synthetase (PurM) C-terminal domain |Francisella tularensis [TaxId: 177416]
d1gu0a_ : (THR32) (ASN79) [view usage] : c.23.13.1 |Flavodoxin-like |Type II 3-dehydroquinate dehydratase |Type II 3-dehydroquinate dehydratase |Type II 3-dehydroquinate dehydratase |Streptomyces coelicolor [TaxId: 1902]
d2bwja_ : (GLY3) (THR42) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3mqda1 : (SER141) (ASP192) [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Brucella melitensis [TaxId: 359391]
d2cu2a2 : (GLU63) (PRO107) [view usage] : c.68.1.20 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |mannose-1-phosphate guanylyl transferase |Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 |Thermus thermophilus [TaxId: 274]
d1g97a2 : (GLY77) (ASP133) [view usage] : c.68.1.5 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |UDP-glucose pyrophosphorylase |N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d3ngtb_ : (THR102) (TRP141) [view usage] : d.58.6.1 |Ferredoxin-like |Nucleoside diphosphate kinase, NDK |Nucleoside diphosphate kinase, NDK |automated matches |Leishmania major [TaxId: 5664]
d4kqfa_ : (THR97) (GLY176) [view usage] : c.39.1.1 |Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) |Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) |Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) |automated matches |Salmonella enterica [TaxId: 99287]
d1jh8a_ : (THR97) (GLY176) [view usage] : c.39.1.1 |Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) |Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) |Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) |Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) |Salmonella typhimurium [TaxId: 90371]
d4a17g_ : (UNK4) (UNK55) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, cytoplasmic (60S subunit) |Tetrahymena thermophila [TaxId: 5911]
d1ylqb_ : (LEU51) (ARG88) [view usage] : d.218.1.5 |Nucleotidyltransferase |Nucleotidyltransferase |Catalytic subunit of bi-partite nucleotidyltransferase |automated matches |Archaeoglobus fulgidus [TaxId: 2234]
d1vr0c_ : (ALA30) (GLU70) [view usage] : c.148.1.1 |ComB-like |ComB-like |ComB-like |2-phosphosulfolactate phosphatase ComB |Clostridium acetobutylicum [TaxId: 1488]
d1xfja_ : (SER11) (ILE76) [view usage] : d.194.1.2 |CNF1/YfiH-like putative cysteine hydrolases |CNF1/YfiH-like putative cysteine hydrolases |YfiH-like |Hypothetical protein CC0490 |Caulobacter crescentus [TaxId: 155892]
d3u0oa2 : (ALA212) (ASP251) [view usage] : d.139.1.0 |PurM C-terminal domain-like |PurM C-terminal domain-like |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1ylqa1 : (LEU51) (ASP90) [view usage] : d.218.1.5 |Nucleotidyltransferase |Nucleotidyltransferase |Catalytic subunit of bi-partite nucleotidyltransferase |Putative nucleotidyltransferase AF0614 |Archaeoglobus fulgidus [TaxId: 2234]
d1nu4a_ : (ARG47) (TYR86) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |Splicesomal U1A protein |Human (Homo sapiens) [TaxId: 9606]
d1i24a_ : (SER53) (PHE97) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Sulfolipid biosynthesis protein SQD1 |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d4mdha1 : (MET46) (VAL86) [view usage] : c.2.1.5 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |LDH N-terminal domain-like |Malate dehydrogenase |Pig (Sus scrofa) [TaxId: 9823]
d1o6da_ : (ASP12) (MET69) [view usage] : c.116.1.3 |alpha/beta knot |alpha/beta knot |YbeA-like |Hypothetical protein TM0844 |Thermotoga maritima [TaxId: 2336]
d2wywa_ : (ARG47) (PRO98) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d2disa1 : (ALA46) (TRP88) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |Hypothetical protein FLJ20273 |Human (Homo sapiens) [TaxId: 9606]
d1e8ca2 : (GLU419) (ALA463) [view usage] : c.59.1.1 |MurD-like peptide ligases, peptide-binding domain |MurD-like peptide ligases, peptide-binding domain |MurCDEF C-terminal domain |UDP-N-acetylmuramyl tripeptide synthetase MurE |Escherichia coli [TaxId: 562]
d1mfpa_ : (LYS45) (ILE92) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Enoyl-ACP reductase |Escherichia coli [TaxId: 562]
d2b7jb_ : (SER187) (PRO226) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |Thioredoxin-like protein Sco1 (YpmQ), soluble domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2qd2a_ : (TYR276) (PRO334) [view usage] : c.92.1.1 |Chelatase-like |Chelatase |Ferrochelatase |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1lrra_ : (ASP102) (GLY142) [view usage] : d.228.1.1 |Replication modulator SeqA, C-terminal DNA-binding domain |Replication modulator SeqA, C-terminal DNA-binding domain |Replication modulator SeqA, C-terminal DNA-binding domain |Replication modulator SeqA, C-terminal DNA-binding domain |Escherichia coli [TaxId: 562]
d2yyea2 : (ASN202) (PHE243) [view usage] : d.139.1.1 |PurM C-terminal domain-like |PurM C-terminal domain-like |PurM C-terminal domain-like |Selenide, water dikinase SelD |Aquifex aeolicus [TaxId: 63363]
d4omaa_ : (SER123) (THR157) [view usage] : c.67.1.3 |PLP-dependent transferase-like |PLP-dependent transferases |Cystathionine synthase-like |automated matches |Citrobacter freundii [TaxId: 546]
d1qrra_ : (SER53) (PHE97) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Sulfolipid biosynthesis protein SQD1 |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1i2ba_ : (SER53) (PHE97) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Sulfolipid biosynthesis protein SQD1 |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1kepb_ : (ASN44) (TYR82) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |dTDP-glucose 4,6-dehydratase (RmlB) |Streptococcus suis, serotype 2 [TaxId: 1307]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.67, c.94, c.2, d.58, i.1, c.68, c.108, c.56, c.92, d.92, c.45, c.23, c.39, c.37, c.47, c.95, d.194, c.8, d.140, c.116,
c.59, d.139, d.218, c.148, d.324, d.228