Tableau information
Concept source: d3gdla_ amino acid (a.a.) range (SER15)(HIS61)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HEHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(SER15) (GLN29) H1
(ASN31) (ASP37) E2
(THR40) (LEU51) H3
(CYS56) (HIS61) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 102.7° E2
H3 60.2° 162.9° H3
E4 -121.4° -25.0° 164.1°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±10.2° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1o68b_ : (THR3) (VAL41) [view usage] : c.1.12.8 |TIM beta/alpha-barrel |Phosphoenolpyruvate/pyruvate domain |Ketopantoate hydroxymethyltransferase PanB |Ketopantoate hydroxymethyltransferase PanB |Neisseria meningitidis [TaxId: 487]
d1wa3c_ : (MET3) (PHE43) [view usage] : c.1.10.1 |TIM beta/alpha-barrel |Aldolase |Class I aldolase |automated matches |Thermotoga maritima [TaxId: 2336]
d3fema_ : (GLU4) (GLU45) [view usage] : c.1.2.0 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1vw4h_ : (SER8) (ASN61) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, mitochondrial (54S or 39S subunit) |Saccharomyces cerevisiae [TaxId: 4932]
d2nv2a_ : (THR6) (GLU46) [view usage] : c.1.2.6 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |PdxS-like |automated matches |Bacillus subtilis [TaxId: 1423]
d1zaxa1 : (GLN6) (ARG55) [view usage] : d.58.62.1 |Ferredoxin-like |Ribosomal protein L10-like |Ribosomal protein L10-like |Ribosomal protein L10 |Thermotoga maritima [TaxId: 2336]
d4v19n_ : (LYS6) (ASN61) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, mitochondrial (54S or 39S subunit) |Pig (Sus scrofa) [TaxId: 9823]
d1rrvb_ : (PRO227) (GLY275) [view usage] : c.87.1.5 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Gtf glycosyltransferase |TDP-vancosaminyltransferase GftD |Amycolatopsis orientalis [TaxId: 31958]
d2nv2i_ : (THR6) (GLU46) [view usage] : c.1.2.6 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |PdxS-like |automated matches |Bacillus subtilis [TaxId: 1423]
d2gq0a_ : (SER415) (ASP462) [view usage] : d.14.1.0 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |automated matches |automated matches |Escherichia coli [TaxId: 562]
d3hmia_ : (GLU284) (GLU354) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3a6ea_ : (LYS13) (PRO66) [view usage] : c.125.1.1 |Creatininase |Creatininase |Creatininase |Creatininase |Pseudomonas putida [TaxId: 303]
d1f8ia_ : (THR47) (GLY92) [view usage] : c.1.12.7 |TIM beta/alpha-barrel |Phosphoenolpyruvate/pyruvate domain |Phosphoenolpyruvate mutase/Isocitrate lyase-like |Isocitrate lyase |Mycobacterium tuberculosis [TaxId: 1773]
d1j2ta_ : (THR11) (PRO66) [view usage] : c.125.1.1 |Creatininase |Creatininase |Creatininase |Creatininase |Pseudomonas putida [TaxId: 303]
d1i4na_ : (ARG31) (LYS84) [view usage] : c.1.2.4 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |Tryptophan biosynthesis enzymes |Indole-3-glycerophosphate synthase, IPGS |Thermotoga maritima [TaxId: 2336]
d4e38c_ : (LEU-10) (PHE44) [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Vibrionales bacterium [TaxId: 391574]
d2nv2k_ : (THR6) (GLU46) [view usage] : c.1.2.6 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |PdxS-like |automated matches |Bacillus subtilis [TaxId: 1423]
d1f61a_ : (THR47) (SER91) [view usage] : c.1.12.7 |TIM beta/alpha-barrel |Phosphoenolpyruvate/pyruvate domain |Phosphoenolpyruvate mutase/Isocitrate lyase-like |Isocitrate lyase |Mycobacterium tuberculosis [TaxId: 1773]
d1cb7b_ : (PHE48) (ASP96) [view usage] : c.1.19.2 |TIM beta/alpha-barrel |Cobalamin (vitamin B12)-dependent enzymes |Glutamate mutase, large subunit |Glutamate mutase, large subunit |Clostridium cochlearium [TaxId: 1494]
d1mxsa_ : (SER12) (LEU60) [view usage] : c.1.10.1 |TIM beta/alpha-barrel |Aldolase |Class I aldolase |KDPG aldolase |Pseudomonas putida [TaxId: 303]
d4adua_ : (ASN7) (GLU49) [view usage] : c.1.2.0 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |automated matches |automated matches |Plasmodium berghei [TaxId: 5821]
d1vc4a_ : (SER36) (THR86) [view usage] : c.1.2.4 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |Tryptophan biosynthesis enzymes |Indole-3-glycerophosphate synthase, IPGS |Thermus thermophilus [TaxId: 274]
d1vkma_ : (VAL152) (PRO216) [view usage] : c.138.1.1 |Indigoidine synthase A-like |Indigoidine synthase A-like |Indigoidine synthase A-like |Hypothetical protein TM1464 |Thermotoga maritima [TaxId: 2336]
d1zawa1 : (THR3) (ARG55) [view usage] : d.58.62.1 |Ferredoxin-like |Ribosomal protein L10-like |Ribosomal protein L10-like |Ribosomal protein L10 |Thermotoga maritima [TaxId: 2336]
d3a6ff_ : (LYS13) (PRO66) [view usage] : c.125.1.1 |Creatininase |Creatininase |Creatininase |Creatininase |Pseudomonas putida [TaxId: 303]
d1evya2 : (ALA157) (ALA196) [view usage] : c.2.1.6 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |6-phosphogluconate dehydrogenase-like, N-terminal domain |Glycerol-3- phosphate dehydrogenase |Trypanosome (Leishmania mexicana) [TaxId: 5665]
d1jaxa_ : (ALA137) (ASP178) [view usage] : c.2.1.6 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |6-phosphogluconate dehydrogenase-like, N-terminal domain |Coenzyme F420H2:NADP+ oxidoreductase (FNO) |Archaeoglobus fulgidus [TaxId: 2234]
d1zava1 : (THR3) (ARG55) [view usage] : d.58.62.1 |Ferredoxin-like |Ribosomal protein L10-like |Ribosomal protein L10-like |Ribosomal protein L10 |Thermotoga maritima [TaxId: 2336]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.2, d.58, i.1, d.144, d.14, c.87, c.125, c.138