Tableau information
Concept source: d3a4ra_ amino acid (a.a.) range (LYS365)(GLY412)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HEHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(LYS365) (MET375) H1
(LYS381) (PHE386) E2
(LEU396) (GLY401) H3
(ASP406) (GLY412) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 125.0° E2
H3 -98.6° -58.0° H3
E4 -59.6° 158.6° 101.4°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3in2a_ : (ASP98) (LEU127) [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Azurin |Pseudomonas aeruginosa [TaxId: 287]
d3bgda_ : (PHE203) (GLU239) [view usage] : c.66.1.36 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Thiopurine S-methyltransferase |Thiopurine S-methyltransferase |Mouse (Mus musculus) [TaxId: 10090]
d1jdia_ : (SER98) (LYS131) [view usage] : c.74.1.1 |AraD/HMP-PK domain-like |AraD/HMP-PK domain-like |AraD-like aldolase/epimerase |L-ribulose-5-phosphate 4-epimerase |Escherichia coli [TaxId: 562]
d2ow6a3 : (HIS230) (PHE266) [view usage] : c.6.2.1 |7-stranded beta/alpha barrel |Glycoside hydrolase/deacetylase |alpha-mannosidase |Golgi alpha-mannosidase II |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1rq5a2 : (PHE274) (ARG304) [view usage] : b.1.18.2 |Immunoglobulin-like beta-sandwich |E set domains |E-set domains of sugar-utilizing enzymes |Cellulose 1,4-beta-cellobiosidase CbhA, precatalytic domain |Clostridium thermocellum [TaxId: 1515]
d3lbla_ : (PRO20) (THR49) [view usage] : a.42.1.1 |SWIB/MDM2 domain |SWIB/MDM2 domain |SWIB/MDM2 domain |MDM2 |Human (Homo sapiens) [TaxId: 9606]
d1rdua_ : (ALA75) (THR110) [view usage] : c.55.5.1 |Ribonuclease H-like motif |Nitrogenase accessory factor-like |MTH1175-like |Hypothetical protein TM1290 |Thermotoga maritima [TaxId: 2336]
d4jysa_ : (ALA144) (VAL184) [view usage] : d.26.1.0 |FKBP-like |FKBP-like |automated matches |automated matches |Plasmodium vivax [TaxId: 126793]
d3aata_ : (SER351) (ALA390) [view usage] : c.67.1.1 |PLP-dependent transferase-like |PLP-dependent transferases |AAT-like |Aspartate aminotransferase, AAT |Escherichia coli [TaxId: 562]
d1i4va_ : (ASP39) (ASP75) [view usage] : b.87.1.1 |LexA/Signal peptidase |LexA/Signal peptidase |LexA-related |UmuD' |Escherichia coli [TaxId: 562]
d4hz1b_ : (ASP98) (LEU127) [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Azurin |Pseudomonas aeruginosa [TaxId: 287]
d3uq8a_ : (LYS277) (PHE316) [view usage] : d.142.2.0 |ATP-grasp |DNA ligase/mRNA capping enzyme, catalytic domain |automated matches |automated matches |Haemophilus influenzae [TaxId: 71421]
d1b0pa2 : (SER1083) (SER1117) [view usage] : c.36.1.12 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |PFOR PP module |Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI |Desulfovibrio africanus [TaxId: 873]
d1jc9a_ : (CYS49) (GLU83) [view usage] : d.171.1.1 |Fibrinogen C-terminal domain-like |Fibrinogen C-terminal domain-like |Fibrinogen C-terminal domain-like |Tachylectin 5a |Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]
d1xm3b_ : (SER24) (LEU58) [view usage] : c.1.31.1 |TIM beta/alpha-barrel |ThiG-like |ThiG-like |Thiazole biosynthesis protein ThiG |Bacillus subtilis [TaxId: 1423]
d1ajsa_ : (ASN351) (CYS390) [view usage] : c.67.1.1 |PLP-dependent transferase-like |PLP-dependent transferases |AAT-like |Aspartate aminotransferase, AAT |Pig (Sus scrofa), cytosolic form [TaxId: 9823]
d1etja_ : (ASP98) (LYS128) [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Azurin |Pseudomonas aeruginosa [TaxId: 287]
d3in0a_ : (ASP98) (LYS128) [view usage] : b.6.1.1 |Cupredoxin-like |Cupredoxins |Plastocyanin/azurin-like |Azurin |Pseudomonas aeruginosa [TaxId: 287]
d4jysb_ : (ALA144) (VAL184) [view usage] : d.26.1.0 |FKBP-like |FKBP-like |automated matches |automated matches |Plasmodium vivax [TaxId: 126793]
d2g4ca1 : (LEU425) (SER457) [view usage] : c.51.1.1 |Anticodon-binding domain-like |Class II aaRS ABD-related |Anticodon-binding domain of Class II aaRS |The aaRS-like accessory subunit of mitochondrial polymerase gamma, C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d2x0na2 : (VAL296) (TRP331) [view usage] : d.81.1.1 |FwdE/GAPDH domain-like |Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain |GAPDH-like |Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) |Trypanosoma brucei brucei, glycosome [TaxId: 5702]
d1k0wa_ : (ARG99) (LYS131) [view usage] : c.74.1.1 |AraD/HMP-PK domain-like |AraD/HMP-PK domain-like |AraD-like aldolase/epimerase |L-ribulose-5-phosphate 4-epimerase |Escherichia coli [TaxId: 562]
d2edma1 : (SER83) (ASN123) [view usage] : b.170.1.1 |WSSV envelope protein-like |WSSV envelope protein-like |WSSV envelope protein-like |Envelope protein VP26 |White spot syndrome virus, WSSV [TaxId: 92652]
d1miqa_ : (PRO138) (GLY171) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |Plasmepsin (a hemoglobin-degrading enzyme) |Plasmodium vivax [TaxId: 5855]
d1a7ka2 : (VAL297) (ASP334) [view usage] : d.81.1.1 |FwdE/GAPDH domain-like |Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain |GAPDH-like |Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) |Trypanosome (Leishmania mexicana) [TaxId: 5665]
d1wepa_ : (GLU45) (HIS73) [view usage] : g.50.1.2 |FYVE/PHD zinc finger |FYVE/PHD zinc finger |PHD domain |PHD finger protein 8 |Mouse (Mus musculus) [TaxId: 10090]
d3r8ja_ : (SER147) (ASN198) [view usage] : d.60.1.0 |Probable bacterial effector-binding domain |Probable bacterial effector-binding domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4erfa_ : (PRO20) (THR49) [view usage] : a.42.1.1 |SWIB/MDM2 domain |SWIB/MDM2 domain |SWIB/MDM2 domain |MDM2 |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.67, c.6, c.66, b.50, c.74, c.36, c.55, d.171, d.81, b.6, b.1, c.51, d.142, d.15, b.87, d.26, a.42, d.60, b.170,
g.50