Tableau information
Concept source: d1ru3a_ amino acid (a.a.) range (LEU239)(ASP282)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HEHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(LEU239) (ARG249) H1
(LEU252) (LEU258) E2
(MET263) (GLY276) H3
(GLY276) (ASP282) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 -79.5° E2
H3 -92.8° -164.2° H3
E4 52.9° -26.6° -143.3°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.6° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3pc6a_ : (ASP539) (TYR574) [view usage] : c.15.1.1 |BRCT domain |BRCT domain |DNA-repair protein XRCC1 |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d4hl6a_ : (GLY8) (PRO43) [view usage] : c.123.1.0 |CoA-transferase family III (CaiB/BaiF) |CoA-transferase family III (CaiB/BaiF) |automated matches |automated matches |Escherichia coli [TaxId: 83333]
d4kr5a_ : (TRP362) (THR397) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Lactococcus lactis [TaxId: 272623]
d1m21a_ : (ASP304) (PRO346) [view usage] : c.117.1.1 |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |Peptide amidase Pam |Stenotrophomonas maltophilia [TaxId: 40324]
d1fjxa_ : (LYS7) (VAL36) [view usage] : c.66.1.26 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |C5 cytosine-specific DNA methylase, DCM |DNA methylase HhaI |Haemophilus haemolyticus [TaxId: 726]
d1ru3a_ : (LEU239) (ASP282) [view usage] : e.26.1.3 |Prismane protein-like |Prismane protein-like |Acetyl-CoA synthase |Monomeric acetyl-CoA synthase |Carboxydothermus hydrogenoformans [TaxId: 129958]
d4hl6b_ : (GLY8) (PRO43) [view usage] : c.123.1.0 |CoA-transferase family III (CaiB/BaiF) |CoA-transferase family III (CaiB/BaiF) |automated matches |automated matches |Escherichia coli [TaxId: 83333]
d1wf6a_ : (PRO37) (GLN73) [view usage] : c.15.1.5 |BRCT domain |BRCT domain |DNA topoisomerase II binding protein 1, TopBP1 |DNA topoisomerase II binding protein 1, TopBP1 |Human (Homo sapiens) [TaxId: 9606]
d1fb5a1 : (PRO75) (THR113) [view usage] : c.78.1.1 |ATC-like |Aspartate/ornithine carbamoyltransferase |Aspartate/ornithine carbamoyltransferase |Ornithine transcarbamoylase |Sheep (Ovis aries) [TaxId: 9940]
d3ubmb_ : (LYS9) (ARG44) [view usage] : c.123.1.0 |CoA-transferase family III (CaiB/BaiF) |CoA-transferase family III (CaiB/BaiF) |automated matches |automated matches |Acetobacter aceti [TaxId: 435]
d4peqd_ : (GLN419) (SER456) [view usage] : c.10.1.1 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |RNI-like |28-residue LRR |automated matches |Cow (Bos taurus) [TaxId: 9913]
d2hx1a_ : (ASP126) (ALA166) [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Cytophaga hutchinsonii [TaxId: 985]
d2zk7b_ : (PHE2) (SER38) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Thermoplasma acidophilum [TaxId: 2303]
d1qo0e_ : (SER2) (PRO44) [view usage] : c.23.1.3 |Flavodoxin-like |CheY-like |Positive regulator of the amidase operon AmiR |Positive regulator of the amidase operon AmiR |Pseudomonas aeruginosa [TaxId: 287]
d2z6qa_ : (LYS7) (VAL36) [view usage] : c.66.1.26 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |C5 cytosine-specific DNA methylase, DCM |DNA methylase HhaI |Haemophilus parahaemolyticus [TaxId: 735]
d1oaoc_ : (ARG237) (ASP279) [view usage] : e.26.1.3 |Prismane protein-like |Prismane protein-like |Acetyl-CoA synthase |Bifunctional carbon monoxide dehydrogenase/acetyl-CoA synthase (CODH/ACS) alpha (ACS) subunit |Moorella thermoacetica [TaxId: 1525]
d2vsna2 : (HIS444) (THR482) [view usage] : c.87.1.12 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |O-GlcNAc transferase, OGT |O-GlcNAc transferase, OGT |Xanthomonas campestris [TaxId: 314565]
d2be7a1 : (GLU38) (GLY73) [view usage] : c.78.1.1 |ATC-like |Aspartate/ornithine carbamoyltransferase |Aspartate/ornithine carbamoyltransferase |Aspartate carbamoyltransferase catalytic subunit |Moritella profunda [TaxId: 111291]
d4hl6d_ : (GLY8) (PRO43) [view usage] : c.123.1.0 |CoA-transferase family III (CaiB/BaiF) |CoA-transferase family III (CaiB/BaiF) |automated matches |automated matches |Escherichia coli [TaxId: 83333]
d2z6aa_ : (LYS7) (VAL36) [view usage] : c.66.1.26 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |C5 cytosine-specific DNA methylase, DCM |DNA methylase HhaI |Haemophilus parahaemolyticus [TaxId: 735]
d1c9ya1 : (PRO75) (THR113) [view usage] : c.78.1.1 |ATC-like |Aspartate/ornithine carbamoyltransferase |Aspartate/ornithine carbamoyltransferase |Ornithine transcarbamoylase |Human (Homo sapiens) [TaxId: 9606]
d2dtda_ : (PHE2) (SER38) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Thermoplasma acidophilum [TaxId: 2303]
d3ubma_ : (LYS9) (ARG44) [view usage] : c.123.1.0 |CoA-transferase family III (CaiB/BaiF) |CoA-transferase family III (CaiB/BaiF) |automated matches |automated matches |Acetobacter aceti [TaxId: 435]
d4fgld_ : (GLY-2) (LEU41) [view usage] : c.23.5.3 |Flavodoxin-like |Flavoproteins |Quinone reductase |Quinone reductase type 2 (menadione reductase) |Human (Homo sapiens) [TaxId: 9606]
d10mha_ : (LYS7) (VAL36) [view usage] : c.66.1.26 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |C5 cytosine-specific DNA methylase, DCM |DNA methylase HhaI |Haemophilus haemolyticus [TaxId: 726]
d2p53a2 : (ASN162) (GLY194) [view usage] : c.1.9.10 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain |N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain |Escherichia coli [TaxId: 562]
d1oaod_ : (GLU238) (ASP279) [view usage] : e.26.1.3 |Prismane protein-like |Prismane protein-like |Acetyl-CoA synthase |Bifunctional carbon monoxide dehydrogenase/acetyl-CoA synthase (CODH/ACS) alpha (ACS) subunit |Moorella thermoacetica [TaxId: 1525]
d4mx6a_ : (GLN169) (LYS199) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Shewanella oneidensis [TaxId: 211586]
d4egqa1 : (ASP5) (ASP48) [view usage] : c.30.1.0 |PreATP-grasp domain |PreATP-grasp domain |automated matches |automated matches |Burkholderia pseudomallei [TaxId: 320372]
d2z8yo_ : (ARG237) (ASP279) [view usage] : e.26.1.3 |Prismane protein-like |Prismane protein-like |Acetyl-CoA synthase |automated matches |Moorella thermoacetica [TaxId: 1525]
d2i9ka_ : (LYS7) (VAL36) [view usage] : c.66.1.26 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |C5 cytosine-specific DNA methylase, DCM |DNA methylase HhaI |Haemophilus haemolyticus [TaxId: 726]
d1mjgm_ : (ALA236) (ASP279) [view usage] : e.26.1.3 |Prismane protein-like |Prismane protein-like |Acetyl-CoA synthase |Bifunctional carbon monoxide dehydrogenase/acetyl-CoA synthase (CODH/ACS) alpha (ACS) subunit |Moorella thermoacetica [TaxId: 1525]
d1gq3c1 : (GLU37) (GLY72) [view usage] : c.78.1.1 |ATC-like |Aspartate/ornithine carbamoyltransferase |Aspartate/ornithine carbamoyltransferase |Aspartate carbamoyltransferase catalytic subunit |Escherichia coli [TaxId: 562]
d4egqb1 : (ASP5) (ASP48) [view usage] : c.30.1.0 |PreATP-grasp domain |PreATP-grasp domain |automated matches |automated matches |Burkholderia pseudomallei [TaxId: 320372]
d2zkid_ : (ASN103) (ILE144) [view usage] : c.23.5.0 |Flavodoxin-like |Flavoproteins |automated matches |automated matches |Sulfolobus tokodaii [TaxId: 111955]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.10, c.123, c.94, c.2, c.108, c.117, c.66, c.23, c.87, c.78, e.26, c.30, c.15