Tableau information
Concept source: d2iy0b_ amino acid (a.a.) range (LEU44)(TYR91)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HEHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(LEU44) (ARG54) H1
(SER61) (PHE66) E2
(THR76) (GLY81) H3
(ASP86) (TYR91) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 131.9° E2
H3 -103.9° -51.5° H3
E4 -57.1° 153.8° 104.6°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4odfa_ : (ARG65) (LYS94) [view usage] : a.42.1.1 |SWIB/MDM2 domain |SWIB/MDM2 domain |SWIB/MDM2 domain |MDM2 |Human (Homo sapiens) [TaxId: 9606]
d1jawa1 : (SER4) (ASP68) [view usage] : c.55.2.1 |Ribonuclease H-like motif |Creatinase/prolidase N-terminal domain |Creatinase/prolidase N-terminal domain |Aminopeptidase P |Escherichia coli [TaxId: 562]
d2iobb2 : (GLN58) (VAL94) [view usage] : d.3.1.15 |Cysteine proteinases |Cysteine proteinases |CHAP domain |Glutathionylspermidine synthase, amidase domain |Escherichia coli [TaxId: 562]
d4dhib_ : (ASP214) (PRO249) [view usage] : d.3.1.0 |Cysteine proteinases |Cysteine proteinases |automated matches |automated matches |Nematode (Caenorhabditis elegans) [TaxId: 6239]
d2noca1 : (PRO51) (LYS89) [view usage] : d.230.6.1 |Dodecin subunit-like |YdgH-like |YdgH-like |Putative periplasmic protein YahO |Salmonella enterica [TaxId: 28901]
d1zud2_ : (THR17) (PHE60) [view usage] : d.15.3.2 |beta-Grasp (ubiquitin-like) |MoaD/ThiS |ThiS |Thiamin biosynthesis sulfur carrier protein ThiS |Escherichia coli [TaxId: 562]
d2lpva_ : (ILE57) (ARG106) [view usage] : d.26.1.1 |FKBP-like |FKBP-like |FKBP immunophilin/proline isomerase |automated matches |Yellow fever mosquito (Aedes aegypti) [TaxId: 7159]
d3h9da_ : (THR58) (GLY113) [view usage] : d.15.1.0 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |automated matches |automated matches |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
d1z2ma1 : (SER24) (SER78) [view usage] : d.15.1.1 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ubiquitin-related |Interferon-induced 15 kDa protein |Human (Homo sapiens) [TaxId: 9606]
d3d32a_ : (THR58) (ASP113) [view usage] : d.15.1.3 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |GABARAP-like |GABA(A) receptor associated protein GABARAP |Human (Homo sapiens) [TaxId: 9606]
d4iw3a_ : (ALA31) (PRO116) [view usage] : b.82.2.0 |Double-stranded beta-helix |Clavaminate synthase-like |automated matches |automated matches |Pseudomonas putida [TaxId: 160488]
d2c3yb2 : (THR818) (TYR853) [view usage] : c.36.1.12 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |PFOR PP module |Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI |Desulfovibrio africanus [TaxId: 873]
d3m95a_ : (THR56) (ASP111) [view usage] : d.15.1.3 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |GABARAP-like |automated matches |Silkworm (Bombyx mori) [TaxId: 7091]
d3d32b_ : (VAL59) (ASP113) [view usage] : d.15.1.3 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |GABARAP-like |GABA(A) receptor associated protein GABARAP |Human (Homo sapiens) [TaxId: 9606]
d1bbua2 : (LEU367) (ILE417) [view usage] : d.104.1.1 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain |Lysyl-tRNA synthetase (LysRS) |Escherichia coli, gene lysS [TaxId: 562]
d2jiga_ : (SER59) (ASP136) [view usage] : b.82.2.15 |Double-stranded beta-helix |Clavaminate synthase-like |proly-4-hydroxylase (P4H, PHD) like |P4H-1 |Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]
d2zpnc_ : (VAL57) (GLY111) [view usage] : d.15.1.3 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |GABARAP-like |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2ki3a_ : (ILE74) (GLU126) [view usage] : d.26.1.0 |FKBP-like |FKBP-like |automated matches |automated matches |Plasmodium vivax [TaxId: 5855]
d1m35a1 : (SER4) (ASP68) [view usage] : c.55.2.1 |Ribonuclease H-like motif |Creatinase/prolidase N-terminal domain |Creatinase/prolidase N-terminal domain |Aminopeptidase P |Escherichia coli [TaxId: 562]
d2bw7c_ : (PRO1143) (ASN1196) [view usage] : d.58.29.1 |Ferredoxin-like |Nucleotide cyclase |Adenylyl and guanylyl cyclase catalytic domain |automated matches |Spirulina platensis [TaxId: 118562]
d1fi4a1 : (GLY154) (ALA184) [view usage] : d.14.1.5 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |GHMP Kinase, N-terminal domain |Mevalonate 5-diphosphate decarboxylase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3ruib_ : (VAL57) (GLY111) [view usage] : d.15.1.3 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |GABARAP-like |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
d1gnua_ : (THR56) (ASP111) [view usage] : d.15.1.3 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |GABARAP-like |GABA(A) receptor associated protein GABARAP |Human (Homo sapiens) [TaxId: 9606]
d1c7ga_ : (ALA363) (PRO408) [view usage] : c.67.1.2 |PLP-dependent transferase-like |PLP-dependent transferases |Beta-eliminating lyases |Tyrosine phenol-lyase |Erwinia herbicola [TaxId: 549]
d1v6ea_ : (THR30) (ASP86) [view usage] : d.15.1.1 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ubiquitin-related |Ubiquitin-like domain of tubulin folding cofactor B |Mouse (Mus musculus) [TaxId: 10090]
d1kp0a1 : (SER20) (GLX72) [view usage] : c.55.2.1 |Ribonuclease H-like motif |Creatinase/prolidase N-terminal domain |Creatinase/prolidase N-terminal domain |Creatinase |Actinobacillus sp. [TaxId: 41114]
d2g19a_ : (THR218) (TYR303) [view usage] : b.82.2.15 |Double-stranded beta-helix |Clavaminate synthase-like |proly-4-hydroxylase (P4H, PHD) like |HIF-P4H2, PHD2 |Human (Homo sapiens) [TaxId: 9606]
d1v86a_ : (THR38) (GLY86) [view usage] : d.15.1.1 |beta-Grasp (ubiquitin-like) |Ubiquitin-like |Ubiquitin-related |hypothetical D7wsu128e protein |Mouse (Mus musculus) [TaxId: 10090]
d4ogna_ : (ARG65) (LYS94) [view usage] : a.42.1.1 |SWIB/MDM2 domain |SWIB/MDM2 domain |SWIB/MDM2 domain |MDM2 |Human (Homo sapiens) [TaxId: 9606]
d1pv9b1 : (LEU5) (VAL44) [view usage] : c.55.2.1 |Ribonuclease H-like motif |Creatinase/prolidase N-terminal domain |Creatinase/prolidase N-terminal domain |Aminopeptidase P |Pyrococcus furiosus [TaxId: 2261]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.82, c.67, d.58, c.36, d.104, c.55, d.14, d.3, d.15, d.26, a.42, d.230