Protein Concepts Dictionary

Tableau information

Concept source:  d1pc6a_  amino acid (a.a.) range (ALA69)(GLN117)

nSSEs in this Concept: 4

String of secondary struct.elems. (SSEs) defining this concept: HEEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (ALA69)   (LEU80) H1
	   (GLN82)   (PRO87) E2
	   (GLY93)   (GLY98) E3
	  (ARG105)  (GLN117) H4

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                          
E2     -105.2°   E2                   
E3       86.3°  154.3°   E3            
H4      114.6° -107.2°  -87.8°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3op2b2 :   (ASP336)  (HIS373)   [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Bordetella bronchiseptica [TaxId: 518]
 d1pc6a_ :    (ALA69)  (GLN117)   [view usage] : d.262.1.1 |NinB |NinB |NinB |NinB |Bacteriophage lambda [TaxId: 10710]
 d3dg3a2 :   (SER322)  (TYR363)   [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
 d3ozmd2 :   (ASP336)  (HIS373)   [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Bordetella bronchiseptica [TaxId: 518]
 d3ozma2 :   (ASP336)  (HIS373)   [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Bordetella bronchiseptica [TaxId: 518]
 d3b9ga_ :   (ASP251)  (ALA316)   [view usage] : c.70.1.1 |Nucleoside hydrolase |Nucleoside hydrolase |Nucleoside hydrolase |automated matches |Trypanosoma vivax [TaxId: 5699]
 d2ff2b_ :   (ASP261)  (ALA326)   [view usage] : c.70.1.1 |Nucleoside hydrolase |Nucleoside hydrolase |Nucleoside hydrolase |automated matches |Trypanosoma vivax [TaxId: 5699]
 d3b9gb_ :   (ASP251)  (ALA316)   [view usage] : c.70.1.1 |Nucleoside hydrolase |Nucleoside hydrolase |Nucleoside hydrolase |automated matches |Trypanosoma vivax [TaxId: 5699]
 d1t1ga_ :   (ASN303)  (LEU356)   [view usage] : c.41.1.2 |Subtilisin-like |Subtilisin-like |Serine-carboxyl proteinase, SCP |Serine-carboxyl proteinase, SCP |Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]
 d1zvka_ :   (ASN303)  (LEU356)   [view usage] : c.41.1.2 |Subtilisin-like |Subtilisin-like |Serine-carboxyl proteinase, SCP |automated matches |Alicyclobacillus sendaiensis [TaxId: 192387]
 d1gt91_ :   (ASN303)  (LEU356)   [view usage] : c.41.1.2 |Subtilisin-like |Subtilisin-like |Serine-carboxyl proteinase, SCP |Serine-carboxyl proteinase, SCP |Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]
 d2ff2a_ :   (ASP261)  (ALA326)   [view usage] : c.70.1.1 |Nucleoside hydrolase |Nucleoside hydrolase |Nucleoside hydrolase |automated matches |Trypanosoma vivax [TaxId: 5699]
 d3mfqa_ :   (ALA107)  (LEU154)   [view usage] : c.92.2.0 |Chelatase-like |"Helical backbone" metal receptor |automated matches |automated matches |Streptococcus suis [TaxId: 391295]
 d1nj1a3 :    (ILE88)  (VAL130)   [view usage] : d.104.1.1 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain |Prolyl-tRNA synthetase (ProRS) |Methanothermobacter thermautotrophicus [TaxId: 145262]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   c.1,    c.92,   d.104,    c.41,    c.70,   d.262