Tableau information
Concept source: d3lqvb_ amino acid (a.a.) range (THR31)(HIS76)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HEEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(THR31) (GLY43) H1
(GLY43) (GLY51) E2
(ALA60) (GLU65) E3
(ILE67) (HIS76) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 143.1° E2
E3 -41.9° 156.4° E3
H4 107.8° -63.5° 139.8°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2dyja1 : (GLY4) (GLU66) [view usage] : d.52.7.1 |Alpha-lytic protease prodomain-like |Ribosome-binding factor A, RbfA |Ribosome-binding factor A, RbfA |Ribosome-binding factor A, RbfA |Thermus thermophilus [TaxId: 274]
d1sd0a2 : (ASP293) (ALA356) [view usage] : d.128.1.2 |Glutamine synthetase/guanido kinase |Glutamine synthetase/guanido kinase |Guanido kinase catalytic domain |Arginine kinase, C-terminal domain |Horseshoe crab (Limulus polyphemus) [TaxId: 6850]
d1o6za2 : (GLY164) (GLY244) [view usage] : d.162.1.1 |LDH C-terminal domain-like |LDH C-terminal domain-like |Lactate & malate dehydrogenases, C-terminal domain |Malate dehydrogenase |Haloarcula marismortui [TaxId: 2238]
d1ibaa_ : (ASP50) (GLY92) [view usage] : d.95.1.1 |Homing endonuclease-like |Glucose permease domain IIB |Glucose permease domain IIB |Glucose permease domain IIB |Escherichia coli [TaxId: 562]
d1f3va_ : (LYS38) (GLY93) [view usage] : d.58.22.1 |Ferredoxin-like |TRADD, N-terminal domain |TRADD, N-terminal domain |TRADD, N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d1sdja2 : (GLY131) (ILE191) [view usage] : d.21.1.2 |Diaminopimelate epimerase-like |Diaminopimelate epimerase-like |PhzC/PhzF-like |Hypothetical protein YddE |Escherichia coli [TaxId: 562]
d1p50a2 : (LYS295) (ALA356) [view usage] : d.128.1.2 |Glutamine synthetase/guanido kinase |Glutamine synthetase/guanido kinase |Guanido kinase catalytic domain |Arginine kinase, C-terminal domain |Horseshoe crab (Limulus polyphemus) [TaxId: 6850]
d4n72c_ : (VAL459) (THR527) [view usage] : c.43.1.0 |CoA-dependent acyltransferases |CoA-dependent acyltransferases |automated matches |automated matches |Escherichia coli [TaxId: 83334]
d1vjha_ : (SER57) (PHE120) [view usage] : d.129.3.1 |TBP-like |Bet v1-like |Pathogenesis-related protein 10 (PR10)-like |Hypothetical protein At1G24000 |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1p52a2 : (LYS295) (ALA355) [view usage] : d.128.1.2 |Glutamine synthetase/guanido kinase |Glutamine synthetase/guanido kinase |Guanido kinase catalytic domain |Arginine kinase, C-terminal domain |Horseshoe crab (Limulus polyphemus) [TaxId: 6850]
d4hx2d_ : (GLU55) (ASN106) [view usage] : d.84.1.0 |Subtilisin inhibitor |Subtilisin inhibitor |automated matches |automated matches |Streptomyces caespitosus [TaxId: 53502]
d4cvqa_ : (ASP348) (SER400) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Escherichia coli [TaxId: 83333]
d2pjyb_ : (LEU90) (ILE124) [view usage] : g.7.1.3 |Snake toxin-like |Snake toxin-like |Extracellular domain of cell surface receptors |TGF-beta type II receptor extracellular domain |Human (Homo sapiens) [TaxId: 9606]
d3o7ba_ : (ASP63) (GLU116) [view usage] : c.116.1.0 |alpha/beta knot |alpha/beta knot |automated matches |automated matches |Archaeoglobus fulgidus [TaxId: 2234]
d1kvna_ : (LYS33) (GLN95) [view usage] : d.201.1.1 |SRP19 |SRP19 |SRP19 |SRP19 |Archaeoglobus fulgidus [TaxId: 2234]
d4lija_ : (GLU120) (GLU168) [view usage] : d.51.1.1 |Eukaryotic type KH-domain (KH-domain type I) |Eukaryotic type KH-domain (KH-domain type I) |Eukaryotic type KH-domain (KH-domain type I) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3p3oa_ : (SER25) (ASP61) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Streptomyces thioluteus [TaxId: 66431]
d3b7wa_ : (PRO475) (HIS518) [view usage] : e.23.1.0 |Acetyl-CoA synthetase-like |Acetyl-CoA synthetase-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3e85a_ : (PRO91) (PRO154) [view usage] : d.129.3.1 |TBP-like |Bet v1-like |Pathogenesis-related protein 10 (PR10)-like |automated matches |Yellow lupine (Lupinus luteus) [TaxId: 3873]
d1m34e_ : (MET58) (GLY113) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Nitrogenase iron protein |Azotobacter vinelandii [TaxId: 354]
d4dqpd2 : (PRO744) (ARG819) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |automated matches |Geobacillus kaustophilus [TaxId: 235909]
d1in0a2 : (THR104) (SER149) [view usage] : d.58.49.1 |Ferredoxin-like |YajQ-like |YajQ-like |Hypothetical protein HI1034 |Haemophilus influenzae [TaxId: 727]
d1llda2 : (THR150) (GLY232) [view usage] : d.162.1.1 |LDH C-terminal domain-like |LDH C-terminal domain-like |Lactate & malate dehydrogenases, C-terminal domain |Lactate dehydrogenase |Bifidobacterium longum, strain am101-2 [TaxId: 216816]
d1vrma1 : (ASP323) (PHE349) [view usage] : d.96.2.1 |T-fold |ApbE-like |ApbE-like |Hypothetical protein TM1553 |Thermotoga maritima [TaxId: 2336]
d1tidb_ : (GLY-2) (GLN33) [view usage] : c.13.2.1 |SpoIIaa-like |SpoIIaa-like |Anti-sigma factor antagonist SpoIIaa |Anti-sigma factor antagonist SpoIIaa |Bacillus stearothermophilus [TaxId: 1422]
d2id1a1 : (GLU2) (GLY63) [view usage] : d.218.1.12 |Nucleotidyltransferase |Nucleotidyltransferase |Iojap/YbeB-like |Hypothetical protein CV0518 |Chromobacterium violaceum [TaxId: 536]
d2dgxa1 : (SER567) (HIS618) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |Limkain-b1, LKAP |Human (Homo sapiens) [TaxId: 9606]
d3u5ej_ : (ARG92) (GLN165) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Saccharomyces cerevisiae [TaxId: 559292]
d3jpzb2 : (PHE295) (GLY357) [view usage] : d.128.1.0 |Glutamine synthetase/guanido kinase |Glutamine synthetase/guanido kinase |automated matches |automated matches |Innkeeper worm (Urechis caupo) [TaxId: 6431]
d4hwxa_ : (GLU55) (ASN104) [view usage] : d.84.1.0 |Subtilisin inhibitor |Subtilisin inhibitor |automated matches |automated matches |Streptomyces caespitosus [TaxId: 53502]
d2r1ca1 : (LYS5) (GLU66) [view usage] : d.52.7.1 |Alpha-lytic protease prodomain-like |Ribosome-binding factor A, RbfA |Ribosome-binding factor A, RbfA |Ribosome-binding factor A, RbfA |Thermus thermophilus [TaxId: 274]
d1ue8a_ : (TYR2) (ASP35) [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Cyp119 |Sulfolobus tokodaii [TaxId: 111955]
d4cvqb_ : (ASP348) (TYR402) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Escherichia coli [TaxId: 83333]
d1zgha2 : (PRO86) (THR147) [view usage] : c.65.1.1 |Formyltransferase |Formyltransferase |Formyltransferase |Methionyl-tRNAfmet formyltransferase |Clostridium thermocellum [TaxId: 1515]
d2ropa2 : (CYS133) (MET183) [view usage] : d.58.17.0 |Ferredoxin-like |HMA, heavy metal-associated domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2zkrd1 : (ARG95) (TYR170) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Dog (Canis familiaris) [TaxId: 9615]
d1hrub_ : (ASN204) (LYS250) [view usage] : d.115.1.1 |YrdC/RibB |YrdC/RibB |YrdC-like |Hypothetical protein YrdC |Escherichia coli [TaxId: 562]
d4hx3f_ : (GLU55) (ASN104) [view usage] : d.84.1.0 |Subtilisin inhibitor |Subtilisin inhibitor |automated matches |automated matches |Streptomyces caespitosus [TaxId: 53502]
d2dyjb_ : (ALA6) (ALA65) [view usage] : d.52.7.1 |Alpha-lytic protease prodomain-like |Ribosome-binding factor A, RbfA |Ribosome-binding factor A, RbfA |Ribosome-binding factor A, RbfA |Thermus thermophilus [TaxId: 274]
d1mu4b_ : (ALA16) (SER52) [view usage] : d.94.1.1 |HPr-like |HPr-like |HPr-like |Crh, catabolite repression HPr-like protein |Bacillus subtilis [TaxId: 1423]
d2kl4a_ : (ALA78) (LYS117) [view usage] : d.198.4.1 |Secretion chaperone-like |YdhG-like |YdhG-like |automated matches |Bacillus halodurans [TaxId: 86665]
d1s07a_ : (ALA377) (GLN422) [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA |Escherichia coli [TaxId: 562]
d2x0ia2 : (GLY164) (PHE234) [view usage] : d.162.1.1 |LDH C-terminal domain-like |LDH C-terminal domain-like |Lactate & malate dehydrogenases, C-terminal domain |Lactate dehydrogenase |Archaeoglobus fulgidus [TaxId: 2234]
d1d3aa2 : (GLY164) (GLY244) [view usage] : d.162.1.1 |LDH C-terminal domain-like |LDH C-terminal domain-like |Lactate & malate dehydrogenases, C-terminal domain |Malate dehydrogenase |Haloarcula marismortui [TaxId: 2238]
d1mbmd_ : (THR159) (LEU200) [view usage] : b.47.1.3 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral proteases |NSP4 proteinase |Equine arteritis virus, EAV [TaxId: 11047]
d1in0a1 : (LEU12) (GLY73) [view usage] : d.58.49.1 |Ferredoxin-like |YajQ-like |YajQ-like |Hypothetical protein HI1034 |Haemophilus influenzae [TaxId: 727]
d2ooxc_ : (ILE503) (SER575) [view usage] : d.129.6.2 |TBP-like |KA1-like |Ssp2 C-terminal domain-like |Snf1-like protein kinase ssp2 |Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
d1pe4a_ : (THR24) (GLY53) [view usage] : g.3.7.1 |Knottins (small inhibitors, toxins, lectins) |Scorpion toxin-like |Long-chain scorpion toxins |Scorpion toxin |Mexican scorpion (Centruroides noxius) [TaxId: 6878]
d1hrua_ : (ASN3) (LYS50) [view usage] : d.115.1.1 |YrdC/RibB |YrdC/RibB |YrdC-like |Hypothetical protein YrdC |Escherichia coli [TaxId: 562]
d2afio_ : (THR56) (GLY113) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Nitrogenase iron protein |Azotobacter vinelandii [TaxId: 354]
d1rl9a2 : (LYS295) (ALA355) [view usage] : d.128.1.2 |Glutamine synthetase/guanido kinase |Glutamine synthetase/guanido kinase |Guanido kinase catalytic domain |Arginine kinase, C-terminal domain |Horseshoe crab (Limulus polyphemus) [TaxId: 6850]
d4gvqa_ : (SER45) (SER92) [view usage] : d.147.1.0 |Methenyltetrahydromethanopterin cyclohydrolase |Methenyltetrahydromethanopterin cyclohydrolase |automated matches |automated matches |Archaeoglobus fulgidus [TaxId: 224325]
d2lxhc_ : (GLU332) (GLN371) [view usage] : g.44.1.0 |RING/U-box |RING/U-box |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1t1ea2 : (LEU85) (GLY126) [view usage] : d.58.3.2 |Ferredoxin-like |Protease propeptides/inhibitors |Subtilase propeptides/inhibitors |Pro-kumamolisin activation domain |Bacillus sp. MN-32 [TaxId: 198803]
d2hlpa2 : (GLY164) (GLY244) [view usage] : d.162.1.1 |LDH C-terminal domain-like |LDH C-terminal domain-like |Lactate & malate dehydrogenases, C-terminal domain |Malate dehydrogenase |Haloarcula marismortui [TaxId: 2238]
d4gvra_ : (SER45) (SER92) [view usage] : d.147.1.0 |Methenyltetrahydromethanopterin cyclohydrolase |Methenyltetrahydromethanopterin cyclohydrolase |automated matches |automated matches |Archaeoglobus fulgidus [TaxId: 224325]
d2m52a_ : (ASP21) (THR80) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |Splicing factor U2AF 65 KDa subunit |Mouse (Mus musculus) [TaxId: 10090]
d1njsa_ : (ALA120) (GLY187) [view usage] : c.65.1.1 |Formyltransferase |Formyltransferase |Formyltransferase |Glycinamide ribonucleotide transformylase, GART |Human (Homo sapiens) [TaxId: 9606]
d1josa_ : (SER8) (SER75) [view usage] : d.52.7.1 |Alpha-lytic protease prodomain-like |Ribosome-binding factor A, RbfA |Ribosome-binding factor A, RbfA |Ribosome-binding factor A, RbfA |Haemophilus influenzae [TaxId: 727]
d1iq0a3 : (LEU2) (LEU47) [view usage] : d.67.2.1 |RRF/tRNA synthetase additional domain-like |Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain |Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain |Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain |Thermus thermophilus [TaxId: 274]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, c.67, a.104, d.58, i.1, b.47, d.129, c.37, d.96, c.13, e.23, c.43, c.116, d.21, d.67, d.162, d.128, c.65, d.95, d.218,
d.94, d.52, d.51, d.198, g.7, g.44, g.3, d.115, d.147, d.84, d.201