Tableau information
Concept source: d2xmma_ amino acid (a.a.) range (GLU13)(GLY60)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HEEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLU13) (ASP27) H1
(ALA30) (LEU36) E2
(LYS39) (THR44) E3
(GLU49) (GLY60) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 161.7° E2
E3 -30.2° 159.9° E3
H4 126.4° -61.4° 131.7°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±12.1° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4oo0b_ : (ALA110) (GLU165) [view usage] : c.51.4.0 |Anticodon-binding domain-like |ITPase-like |automated matches |automated matches |Burkholderia cenocepacia [TaxId: 216591]
d1ayga_ : (ASP37) (ILE79) [view usage] : a.3.1.1 |Cytochrome c |Cytochrome c |monodomain cytochrome c |Cytochrome c552 |Hydrogenobacter thermophilus [TaxId: 940]
d1htoa2 : (ASP190) (GLY250) [view usage] : d.128.1.1 |Glutamine synthetase/guanido kinase |Glutamine synthetase/guanido kinase |Glutamine synthetase catalytic domain |Glutamine synthetase, C-terminal domain |Mycobacterium tuberculosis [TaxId: 1773]
d4c2mz_ : (HIS70) (MET142) [view usage] : d.74.3.0 |DCoH-like |RBP11-like subunits of RNA polymerase |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2d0pd_ : (VAL46) (PRO82) [view usage] : c.51.3.2 |Anticodon-binding domain-like |B12-dependent dehydatase associated subunit |Dehydratase-reactivating factor beta subunit |automated matches |Klebsiella oxytoca [TaxId: 571]
d3k5la2 : (ARG514) (ALA578) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |automated matches |Escherichia coli [TaxId: 562]
d1o90a1 : (HIS30) (ILE91) [view usage] : d.130.1.1 |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1dvva_ : (ALA40) (SER80) [view usage] : a.3.1.1 |Cytochrome c |Cytochrome c |monodomain cytochrome c |Cytochrome c551 |Pseudomonas aeruginosa [TaxId: 287]
d3mm5b1 : (ILE64) (GLY112) [view usage] : d.58.36.2 |Ferredoxin-like |Nitrite/Sulfite reductase N-terminal domain-like |DsrA/DsrB N-terminal-domain-like |Dissimilatory sulfite reductase subunit beta, DsrB |Archaeoglobus fulgidus [TaxId: 2234]
d3cqzk_ : (HIS40) (GLN112) [view usage] : d.74.3.2 |DCoH-like |RBP11-like subunits of RNA polymerase |RBP11/RpoL |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1i3qk_ : (HIS40) (GLN112) [view usage] : d.74.3.2 |DCoH-like |RBP11-like subunits of RNA polymerase |RBP11/RpoL |RPB11 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1l9aa_ : (LEU31) (ILE82) [view usage] : d.201.1.1 |SRP19 |SRP19 |SRP19 |SRP19 |Methanococcus jannaschii [TaxId: 2190]
d2v0na3 : (HIS340) (SER396) [view usage] : d.58.29.2 |Ferredoxin-like |Nucleotide cyclase |GGDEF domain |Response regulator PleD, C-terminal domain |Caulobacter crescentus [TaxId: 155892]
d3j6vv_ : (ALA83) (SER139) [view usage] : i.1.1.3 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Small subunit |Eukaryotic, mitochondrial (28S subunit) |Cow (Bos taurus) [TaxId: 9913]
d2zh7a2 : (GLU19) (VAL86) [view usage] : d.218.1.0 |Nucleotidyltransferase |Nucleotidyltransferase |automated matches |automated matches |Archaeoglobus fulgidus [TaxId: 2234]
d2bjoa_ : (PRO44) (LEU111) [view usage] : d.227.1.0 |OsmC-like |OsmC-like |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
d1qgia_ : (SER95) (GLN131) [view usage] : d.2.1.7 |Lysozyme-like |Lysozyme-like |Chitosanase |Endochitosanase |Bacillus circulans [TaxId: 1397]
d3c1na3 : (ILE420) (LYS466) [view usage] : d.58.18.0 |Ferredoxin-like |ACT-like |automated matches |automated matches |Methanocaldococcus jannaschii [TaxId: 2190]
d3fcca_ : (GLU410) (ASN467) [view usage] : e.23.1.0 |Acetyl-CoA synthetase-like |Acetyl-CoA synthetase-like |automated matches |automated matches |Bacillus cereus [TaxId: 226900]
d1q2la2 : (ASN789) (ALA845) [view usage] : d.185.1.1 |LuxS/MPP-like metallohydrolase |LuxS/MPP-like metallohydrolase |MPP-like |Protease III |Escherichia coli [TaxId: 562]
d1b8pa2 : (ARG160) (ASN213) [view usage] : d.162.1.1 |LDH C-terminal domain-like |LDH C-terminal domain-like |Lactate & malate dehydrogenases, C-terminal domain |Malate dehydrogenase |Aquaspirillum arcticum [TaxId: 87645]
d1vlab_ : (THR50) (CYS118) [view usage] : d.227.1.2 |OsmC-like |OsmC-like |YhfA-like |Hypothetical protein TM0919 |Thermotoga maritima [TaxId: 2336]
d1sb6a_ : (GLU17) (GLY60) [view usage] : d.58.17.1 |Ferredoxin-like |HMA, heavy metal-associated domain |HMA, heavy metal-associated domain |Copper chaperone |Synechocystis sp. PCC 6803, Scatx1 [TaxId: 1148]
d2d0pb_ : (VAL46) (PRO82) [view usage] : c.51.3.2 |Anticodon-binding domain-like |B12-dependent dehydatase associated subunit |Dehydratase-reactivating factor beta subunit |automated matches |Klebsiella oxytoca [TaxId: 571]
d4jukb_ : (GLU103) (GLY155) [view usage] : h.3.1.1 |Stalk segment of viral fusion proteins |Influenza hemagglutinin (stalk) |Influenza hemagglutinin (stalk) |automated matches |Influenza a virus [TaxId: 573943]
d1xrba1 : (PRO15) (GLY76) [view usage] : d.130.1.1 |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |Escherichia coli [TaxId: 562]
d3edna2 : (SER134) (MSE178) [view usage] : d.21.1.0 |Diaminopimelate epimerase-like |Diaminopimelate epimerase-like |automated matches |automated matches |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
d1mw7a_ : (SER150) (LYS193) [view usage] : e.39.1.1 |YebC-like |YebC-like |YebC-like |Hypothetical protein HP0162 |Helicobacter pylori [TaxId: 210]
d2u1aa_ : (ASN26) (LEU70) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |Splicesomal U1A protein |Human (Homo sapiens) [TaxId: 9606]
d1vh2a_ : (GLY65) (HIS113) [view usage] : d.185.1.2 |LuxS/MPP-like metallohydrolase |LuxS/MPP-like metallohydrolase |Autoinducer-2 production protein LuxS |Autoinducer-2 production protein LuxS |Deinococcus radiodurans [TaxId: 1299]
d2k1ha_ : (GLU40) (ASN86) [view usage] : d.267.1.0 |Hypothetical protein SAV1430 |Hypothetical protein SAV1430 |automated matches |automated matches |Staphylococcus epidermidis [TaxId: 176280]
d3r5gb_ : (ALA247) (GLY321) [view usage] : d.58.29.0 |Ferredoxin-like |Nucleotide cyclase |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d4c2mk_ : (HIS70) (MET142) [view usage] : d.74.3.0 |DCoH-like |RBP11-like subunits of RNA polymerase |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2b51a1 : (ASP188) (ILE231) [view usage] : d.218.1.10 |Nucleotidyltransferase |Nucleotidyltransferase |RNA editing terminal uridyl transferase 2, RET2, catalytic domain |RNA editing terminal uridyl transferase 2, TUTase 2, RET2 |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
d2d05a_ : (SER95) (LEU130) [view usage] : d.2.1.7 |Lysozyme-like |Lysozyme-like |Chitosanase |Endochitosanase |Bacillus circulans [TaxId: 1397]
d1uiua_ : (ALA81) (LEU135) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Nickel-binding periplasmic protein NikA |Escherichia coli [TaxId: 562]
d3so4d1 : (PRO17) (GLY78) [view usage] : d.130.1.0 |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |automated matches |automated matches |Entamoeba (Entamoeba histolytica) [TaxId: 5759]
d3dp8c_ : (ALA81) (LEU135) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Nickel-binding periplasmic protein NikA |Escherichia coli [TaxId: 562]
d2p02a3 : (ARG314) (ASN374) [view usage] : d.130.1.1 |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |Human (Homo sapiens), isoform type-2 [TaxId: 9606]
d3sjja2 : (ARG581) (LYS635) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
d3gzja_ : (GLY90) (LYS131) [view usage] : c.69.1.20 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Hydroxynitrile lyase-like |automated matches |Rauvolfia serpentina [TaxId: 4060]
d1xppa_ : (ASN30) (HIS105) [view usage] : d.74.3.2 |DCoH-like |RBP11-like subunits of RNA polymerase |RBP11/RpoL |DNA-directed RNA polymerase subunit L, RpoL |Thermoplasma acidophilum [TaxId: 2303]
d1fjgc1 : (TYR29) (GLY78) [view usage] : d.52.3.1 |Alpha-lytic protease prodomain-like |Prokaryotic type KH domain (KH-domain type II) |Prokaryotic type KH domain (KH-domain type II) |Ribosomal protein S3 N-terminal domain |Thermus thermophilus [TaxId: 274]
d2ffma_ : (PHE41) (GLU83) [view usage] : d.267.1.1 |Hypothetical protein SAV1430 |Hypothetical protein SAV1430 |Hypothetical protein SAV1430 |automated matches |Staphylococcus aureus [TaxId: 158878]
d2f4fa1 : (ASN30) (PHE92) [view usage] : d.58.57.1 |Ferredoxin-like |Transposase IS200-like |Transposase IS200-like |Putative transposase SSO1474 |Sulfolobus solfataricus [TaxId: 2287]
d1o90a3 : (VAL291) (ASN353) [view usage] : d.130.1.1 |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1ny8a_ : (ASN8) (SER46) [view usage] : d.52.6.1 |Alpha-lytic protease prodomain-like |BolA-like |BolA-like |Hypothetical protein YrbA |Escherichia coli [TaxId: 562]
d2v8za_ : (PHE265) (LYS307) [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d2go5b1 : (THR45) (LEU115) [view usage] : d.201.1.1 |SRP19 |SRP19 |SRP19 |SRP19 |Human (Homo sapiens) [TaxId: 9606]
d1qwta_ : (THR370) (MET419) [view usage] : b.26.1.3 |SMAD/FHA domain |SMAD/FHA domain |Interferon regulatory factor 3 (IRF3), transactivation domain |Interferon regulatory factor 3 (IRF3), transactivation domain |Human (Homo sapiens) [TaxId: 9606]
d2d74b1 : (ASP59) (GLU103) [view usage] : d.241.1.0 |Ribosome binding domain-like |Translation initiation factor 2 beta, aIF2beta, N-terminal domain |automated matches |automated matches |Pyrococcus furiosus [TaxId: 186497]
d1pu1a_ : (GLY9) (LEU86) [view usage] : d.266.1.1 |Hypothetical protein MTH677 |Hypothetical protein MTH677 |Hypothetical protein MTH677 |Hypothetical protein MTH677 |Methanobacterium thermoautotrophicum [TaxId: 145262]
d1no5b_ : (LYS10) (SER72) [view usage] : d.218.1.5 |Nucleotidyltransferase |Nucleotidyltransferase |Catalytic subunit of bi-partite nucleotidyltransferase |Hypothetical protein HI0073 |Haemophilus influenzae [TaxId: 727]
d1xppb_ : (ASN30) (LEU86) [view usage] : d.74.3.2 |DCoH-like |RBP11-like subunits of RNA polymerase |RBP11/RpoL |DNA-directed RNA polymerase subunit L, RpoL |Thermoplasma acidophilum [TaxId: 2303]
d1m32a_ : (ARG312) (MSE362) [view usage] : c.67.1.3 |PLP-dependent transferase-like |PLP-dependent transferases |Cystathionine synthase-like |2-aminoethylphosphonate transaminase |Salmonella typhimurium [TaxId: 90371]
d1xtya_ : (ASP65) (SER112) [view usage] : c.131.1.0 |Peptidyl-tRNA hydrolase II |Peptidyl-tRNA hydrolase II |automated matches |automated matches |Pyrococcus abyssi [TaxId: 29292]
d2e1ba2 : (ASP88) (GLY158) [view usage] : d.67.1.2 |RRF/tRNA synthetase additional domain-like |ThrRS/AlaRS common domain |AlaX-like |AlaX-M trans-editing enzyme, C-terminal domain |Pyrococcus horikoshii [TaxId: 53953]
d1wyta1 : (ASP385) (LEU437) [view usage] : c.67.1.7 |PLP-dependent transferase-like |PLP-dependent transferases |Glycine dehydrogenase subunits (GDC-P) |Glycine dehydrogenase (decarboxylating) subunit 1 |Thermus thermophilus [TaxId: 274]
d1tjea2 : (ASP64) (LYS130) [view usage] : d.67.1.1 |RRF/tRNA synthetase additional domain-like |ThrRS/AlaRS common domain |Threonyl-tRNA synthetase (ThrRS), second 'additional' domain |Threonyl-tRNA synthetase (ThrRS), second 'additional' domain |Escherichia coli [TaxId: 562]
d1ywsa1 : (TYR34) (GLY71) [view usage] : g.41.17.1 |Rubredoxin-like |CSL zinc finger |CSL zinc finger |Diphthamide biosynthesis protein 3, DPH3 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2obva3 : (ARG292) (ASN352) [view usage] : d.130.1.0 |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1f1ha2 : (GLN189) (GLY250) [view usage] : d.128.1.1 |Glutamine synthetase/guanido kinase |Glutamine synthetase/guanido kinase |Glutamine synthetase catalytic domain |Glutamine synthetase, C-terminal domain |Salmonella typhimurium [TaxId: 90371]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, c.1, c.67, c.69, c.94, d.58, i.1, d.185, d.2, e.23, c.51, d.21, b.26, d.67, d.162, h.3, d.128, a.3, d.74, d.218,
d.227, d.130, d.52, g.41, c.131, d.267, e.39, d.241, d.201, d.266