Tableau information
Concept source: d1tbxa_ amino acid (a.a.) range (SER39)(PHE76)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HEEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(SER39) (GLY54) H1
(PHE55) (GLN60) E2
(GLU64) (THR70) E3
(THR70) (PHE76) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 -109.3° E2
E3 49.1° 156.7° E3
H4 118.5° -121.3° -73.1°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±11.8° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2a61a1 : (VAL69) (LEU120) [view usage] : a.4.5.28 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |MarR-like transcriptional regulators |Transcriptional regulator TM0710 |Thermotoga maritima [TaxId: 2336]
d3aiua_ : (GLY466) (SER498) [view usage] : c.1.8.4 |TIM beta/alpha-barrel |(Trans)glycosidases |Family 1 of glycosyl hydrolase |automated matches |Secale cereale [TaxId: 4550]
d1ibaa_ : (MET15) (LYS48) [view usage] : d.95.1.1 |Homing endonuclease-like |Glucose permease domain IIB |Glucose permease domain IIB |Glucose permease domain IIB |Escherichia coli [TaxId: 562]
d1tbxb_ : (SER39) (LYS91) [view usage] : a.4.5.48 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |F93-like |Hypothetical protein F93 |Sulfolobus virus-like particle SSV1 [TaxId: 244589]
d3n0sa_ : (ASP218) (LYS263) [view usage] : c.140.1.0 |TTHA0583/YokD-like |TTHA0583/YokD-like |automated matches |automated matches |Bacillus anthracis [TaxId: 198094]
d2f3wa_ : (TYR54) (LEU103) [view usage] : b.40.1.1 |OB-fold |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcal nuclease |Staphylococcus aureus [TaxId: 1280]
d3k5ra2 : (GLN151) (ASP180) [view usage] : b.1.6.0 |Immunoglobulin-like beta-sandwich |Cadherin-like |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d3i54b2 : (SER187) (ARG222) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d2nygd_ : (ARG220) (LYS269) [view usage] : c.140.1.2 |TTHA0583/YokD-like |TTHA0583/YokD-like |Aminoglycoside 3-N-acetyltransferase-like |Uncharacterized protein YokD |Bacillus subtilis [TaxId: 1423]
d1h4sa2 : (PHE14) (GLY62) [view usage] : d.104.1.1 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain |Prolyl-tRNA synthetase (ProRS) |Thermus thermophilus [TaxId: 274]
d2jscb_ : (CYS57) (LEU89) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d3qrff_ : (TRP381) (LYS416) [view usage] : a.4.5.14 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Forkhead DNA-binding domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1wkra_ : (GLY309) (ALA337) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |Acid protease |Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]
d2dgaa_ : (GLY466) (SER498) [view usage] : c.1.8.4 |TIM beta/alpha-barrel |(Trans)glycosidases |Family 1 of glycosyl hydrolase |automated matches |Wheat (Triticum aestivum) [TaxId: 4565]
d3izbs_ : (SER97) (GLU144) [view usage] : i.1.1.3 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Small subunit |Eukaryotic, cytoplasmic (40S subunit) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2bufc_ : (GLN71) (GLN107) [view usage] : c.73.1.2 |Carbamate kinase-like |Carbamate kinase-like |N-acetyl-l-glutamate kinase |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d2fk4a1 : (SER34) (SER63) [view usage] : g.90.1.1 |E6 C-terminal domain-like |E6 C-terminal domain-like |E6 C-terminal domain-like |E6 oncoprotein |Human papillomavirus type 16 [TaxId: 333760]
d3j38k_ : (ASN40) (HIS82) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Drosophila melanogaster [TaxId: 7227]
d3brob_ : (LEU68) (LEU100) [view usage] : a.4.5.28 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |MarR-like transcriptional regulators |Transcriptional regulator OEOE1854 |Oenococcus oeni [TaxId: 1247]
d2frha_ : (LYS163) (GLU221) [view usage] : a.4.5.28 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |MarR-like transcriptional regulators |Pleiotropic regulator of virulence genes, SarA |Staphylococcus aureus [TaxId: 1280]
d4hqmb_ : (ALA51) (LEU92) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Staphylococcus aureus [TaxId: 1280]
d2ldua_ : (PRO18) (TYR62) [view usage] : a.4.5.22 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Heat-shock transcription factor |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1h16a_ : (ASN437) (LYS503) [view usage] : c.7.1.1 |PFL-like glycyl radical enzymes |PFL-like glycyl radical enzymes |PFL-like |Pyruvate formate-lyase, PFL |Escherichia coli [TaxId: 562]
d1dela_ : (LYS76) (ILE125) [view usage] : c.37.1.1 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nucleotide and nucleoside kinases |Deoxynucleoside monophosphate kinase |Bacteriophage T4 [TaxId: 10665]
d4hwtb1 : (ASP355) (ARG400) [view usage] : d.104.1.0 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4ejoa_ : (GLU48) (GLU109) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Eggerthella lenta [TaxId: 479437]
d1klqa_ : (LEU15) (GLN73) [view usage] : d.135.1.1 |The spindle assembly checkpoint protein mad2 |The spindle assembly checkpoint protein mad2 |The spindle assembly checkpoint protein mad2 |The spindle assembly checkpoint protein mad2 |Human (Homo sapiens) [TaxId: 9606]
d1e6yb1 : (THR2261) (ARG2320) [view usage] : a.89.1.1 |Methyl-coenzyme M reductase alpha and beta chain C-terminal domain |Methyl-coenzyme M reductase alpha and beta chain C-terminal domain |Methyl-coenzyme M reductase alpha and beta chain C-terminal domain |Beta chain |Methanosarcina barkeri [TaxId: 2208]
d1nj8a3 : (PHE3) (THR40) [view usage] : d.104.1.1 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain |Prolyl-tRNA synthetase (ProRS) |Methanocaldococcus jannaschii [TaxId: 2190]
d2a61c_ : (VAL69) (GLY121) [view usage] : a.4.5.28 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |MarR-like transcriptional regulators |automated matches |Thermotoga maritima [TaxId: 2336]
d2h6ba1 : (HIS190) (GLU227) [view usage] : a.4.5.4 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |CAP C-terminal domain-like |Chlorophenol reduction protein CprK |Desulfitobacterium hafniense [TaxId: 49338]
d1eyyb_ : (PRO325) (HIS371) [view usage] : c.82.1.1 |ALDH-like |ALDH-like |ALDH-like |Aldehyde reductase (dehydrogenase), ALDH |Vibrio harveyi [TaxId: 669]
d3hhhb_ : (GLY44) (LYS104) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Enterococcus faecalis [TaxId: 1351]
d1qs8b_ : (PRO223) (PRO255) [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |Plasmepsin (a hemoglobin-degrading enzyme) |Plasmodium vivax [TaxId: 5855]
d1foka1 : (ASP103) (SER141) [view usage] : a.4.5.12 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Restriction endonuclease FokI, N-terminal (recognition) domain |Restriction endonuclease FokI, N-terminal (recognition) domain |Flavobacterium okeanokoites [TaxId: 244]
d1tbxa_ : (SER39) (PHE76) [view usage] : a.4.5.48 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |F93-like |Hypothetical protein F93 |Sulfolobus virus-like particle SSV1 [TaxId: 244589]
d1in4a1 : (GLU298) (LYS325) [view usage] : a.4.5.11 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Helicase DNA-binding domain |Holliday junction helicase RuvB |Thermotoga maritima [TaxId: 2336]
d2axla1 : (SER65) (GLU109) [view usage] : a.4.5.43 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |RecQ helicase DNA-binding domain-like |Werner syndrome ATP-dependent helicase WRN |Human (Homo sapiens) [TaxId: 9606]
d1hsja1 : (LYS433) (LYS486) [view usage] : a.4.5.28 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |MarR-like transcriptional regulators |Staphylococcal accessory regulator A homolog, SarR |Staphylococcus aureus [TaxId: 1280]
d3l7wa_ : (LYS39) (GLY101) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Streptococcus mutans [TaxId: 210007]
d1nj1a3 : (GLU19) (LEU65) [view usage] : d.104.1.1 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain |Prolyl-tRNA synthetase (ProRS) |Methanothermobacter thermautotrophicus [TaxId: 145262]
d1cm5a_ : (ASN437) (LYS503) [view usage] : c.7.1.1 |PFL-like glycyl radical enzymes |PFL-like glycyl radical enzymes |PFL-like |Pyruvate formate-lyase, PFL |Escherichia coli [TaxId: 562]
d2okma_ : (SER101) (ARG131) [view usage] : b.2.3.0 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |automated matches |automated matches |Enterococcus faecalis [TaxId: 1351]
d1nyqa4 : (ASP242) (GLY289) [view usage] : d.104.1.1 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain |Threonyl-tRNA synthetase (ThrRS) |Staphylococcus aureus [TaxId: 1280]
d1e6ye1 : (THR5261) (ARG5320) [view usage] : a.89.1.1 |Methyl-coenzyme M reductase alpha and beta chain C-terminal domain |Methyl-coenzyme M reductase alpha and beta chain C-terminal domain |Methyl-coenzyme M reductase alpha and beta chain C-terminal domain |Beta chain |Methanosarcina barkeri [TaxId: 2208]
d3sqgb2 : (SER259) (ARG318) [view usage] : a.89.1.0 |Methyl-coenzyme M reductase alpha and beta chain C-terminal domain |Methyl-coenzyme M reductase alpha and beta chain C-terminal domain |automated matches |automated matches |Uncultured archaeon [TaxId: 115547]
d1amxa_ : (GLY236) (SER271) [view usage] : b.2.3.1 |Common fold of diphtheria toxin/transcription factors/cytochrome f |Bacterial adhesins |Collagen-binding domain of adhesin |Collagen-binding domain of adhesin |Staphylococcus aureus [TaxId: 1280]
d1i7da_ : (THR524) (LEU561) [view usage] : e.10.1.1 |Prokaryotic type I DNA topoisomerase |Prokaryotic type I DNA topoisomerase |Prokaryotic type I DNA topoisomerase |DNA topoisomerase III |Escherichia coli [TaxId: 562]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, i.1, c.82, c.140, b.50, b.40, c.37, c.7, d.104, b.2, b.1, c.73, a.4, d.95, a.89, e.10, d.135, g.90