Tableau information
Concept source: d1u0ca_ amino acid (a.a.) range (ASN6)(ARG52)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HEEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASN6) (VAL17) H1
(ASP20) (ASN30) E2
(LEU39) (LYS48) E3
(LYS48) (ARG52) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 -72.7° E2
E3 84.7° 142.4° E3
H4 -158.1° -90.0° 102.5°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±11.8° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2cava1 : (SER53) (THR77) [view usage] : b.82.1.2 |Double-stranded beta-helix |RmlC-like cupins |Germin/Seed storage 7S protein |Seed storage 7S protein |Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]
d1u0ca_ : (ASN6) (ARG52) [view usage] : d.95.2.1 |Homing endonuclease-like |Homing endonucleases |Group I mobile intron endonuclease |DNA endonuclease I-CreI |Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]
d2i3qa_ : (LYS7) (ARG52) [view usage] : d.95.2.1 |Homing endonuclease-like |Homing endonucleases |Group I mobile intron endonuclease |automated matches |Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]
d1t9ib_ : (LYS307) (ARG352) [view usage] : d.95.2.1 |Homing endonuclease-like |Homing endonucleases |Group I mobile intron endonuclease |DNA endonuclease I-CreI |Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]
d1evka2 : (SER488) (PHE529) [view usage] : d.104.1.1 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain |Threonyl-tRNA synthetase (ThrRS) |Escherichia coli [TaxId: 562]
d1f13a4 : (GLU198) (GLN246) [view usage] : d.3.1.4 |Cysteine proteinases |Cysteine proteinases |Transglutaminase core |Transglutaminase catalytic domain |Human (Homo sapiens), blood isozyme [TaxId: 9606]
d1vw4z_ : (LYS59) (GLY96) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, mitochondrial (54S or 39S subunit) |Saccharomyces cerevisiae [TaxId: 4932]
d1evua4 : (ASN197) (GLN246) [view usage] : d.3.1.4 |Cysteine proteinases |Cysteine proteinases |Transglutaminase core |Transglutaminase catalytic domain |Human (Homo sapiens), blood isozyme [TaxId: 9606]
d2h3ha_ : (GLN258) (GLY300) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Thermotoga maritima [TaxId: 2336]
d1u0da_ : (LYS7) (ARG52) [view usage] : d.95.2.1 |Homing endonuclease-like |Homing endonucleases |Group I mobile intron endonuclease |DNA endonuclease I-CreI |Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]
d4hwtb1 : (GLN599) (GLY642) [view usage] : d.104.1.0 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2vbjb_ : (LYS7) (ARG52) [view usage] : d.95.2.1 |Homing endonuclease-like |Homing endonucleases |Group I mobile intron endonuclease |automated matches |Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]
d1t9ia_ : (LYS7) (ARG52) [view usage] : d.95.2.1 |Homing endonuclease-like |Homing endonucleases |Group I mobile intron endonuclease |DNA endonuclease I-CreI |Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]
d2mpua_ : (GLU60) (GLY91) [view usage] : d.58.7.0 |Ferredoxin-like |RNA-binding domain, RBD |automated matches |automated matches |Barley (Hordeum vulgare) [TaxId: 4513]
d3b1cd_ : (GLN308) (LYS347) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Streptococcus anginosus [TaxId: 1328]
d2j0181 : (LYS8) (LYS44) [view usage] : d.301.1.1 |L35p-like |L35p-like |Ribosomal protein L35p |Ribosomal protein L35p |Thermus thermophilus [TaxId: 274]
d1ex0a4 : (ASN197) (GLN246) [view usage] : d.3.1.4 |Cysteine proteinases |Cysteine proteinases |Transglutaminase core |Transglutaminase catalytic domain |Human (Homo sapiens), blood isozyme [TaxId: 9606]
d1ksia2 : (THR14) (HIS57) [view usage] : d.17.2.1 |Cystatin-like |Amine oxidase N-terminal region |Amine oxidase N-terminal region |Copper amine oxidase, domains 1 and 2 |Pea (Pisum sativum) [TaxId: 3888]
d2vbja_ : (LYS7) (ARG52) [view usage] : d.95.2.1 |Homing endonuclease-like |Homing endonucleases |Group I mobile intron endonuclease |automated matches |Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]
d3r20a_ : (ASP56) (GLY93) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
d1nyqa4 : (LEU494) (THR532) [view usage] : d.104.1.1 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain |Threonyl-tRNA synthetase (ThrRS) |Staphylococcus aureus [TaxId: 1280]
d2d4ad2 : (TYR223) (THR301) [view usage] : d.162.1.0 |LDH C-terminal domain-like |LDH C-terminal domain-like |automated matches |automated matches |Aeropyrum pernix [TaxId: 56636]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.82, c.67, d.58, i.1, c.93, c.37, d.104, d.3, d.17, d.162, d.95, d.301