Tableau information
Concept source: d1pdub_ amino acid (a.a.) range (SER396)(SER431)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HEEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(SER396) (ALA408) H1
(THR413) (CYS418) E2
(GLY420) (HIS424) E3
(ARG425) (SER431) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 133.4° E2
E3 -67.0° 159.3° E3
H4 -153.7° 70.8° 88.5°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.9° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1fcxa_ : (SER255) (ASN301) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Retinoic acid receptor gamma (RAR-gamma) |Human (Homo sapiens) [TaxId: 9606]
d3ieza_ : (ILE1537) (LYS1570) [view usage] : d.332.1.1 |RGC domain-like |RGC domain-like |RGC domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3lfja_ : (SER124) (PRO164) [view usage] : c.38.1.0 |PTS IIb component |PTS IIb component |automated matches |automated matches |Thermoanaerobacter tengcongensis [TaxId: 273068]
d2ouxb2 : (THR154) (ASN196) [view usage] : d.37.1.1 |CBS-domain pair |CBS-domain pair |CBS-domain pair |Magnesium transporter MgtE |Enterococcus faecalis [TaxId: 1351]
d3lfjb_ : (SER124) (PRO164) [view usage] : c.38.1.0 |PTS IIb component |PTS IIb component |automated matches |automated matches |Thermoanaerobacter tengcongensis [TaxId: 273068]
d4c2bb_ : (ILE213) (GLN247) [view usage] : c.10.2.7 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |Ngr ectodomain-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1hska1 : (GLU158) (GLU184) [view usage] : d.145.1.2 |FAD-binding/transporter-associated domain-like |FAD-binding/transporter-associated domain-like |Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain |Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain |Staphylococcus aureus [TaxId: 1280]
d1exaa_ : (SER255) (ASN301) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Retinoic acid receptor gamma (RAR-gamma) |Human (Homo sapiens) [TaxId: 9606]
d2hkva1 : (LEU81) (GLY139) [view usage] : a.213.1.2 |DinB/YfiT-like putative metalloenzymes |DinB/YfiT-like putative metalloenzymes |DinB-like |Hypothetical protein ExigDRAFT_2445 |Exiguobacterium sibiricum 255-15 [TaxId: 262543]
d1f1ha1 : (SER1) (ASN39) [view usage] : d.15.9.1 |beta-Grasp (ubiquitin-like) |Glutamine synthetase, N-terminal domain |Glutamine synthetase, N-terminal domain |Glutamine synthetase, N-terminal domain |Salmonella typhimurium [TaxId: 90371]
d1aiha_ : (THR215) (MET246) [view usage] : d.163.1.1 |DNA breaking-rejoining enzymes |DNA breaking-rejoining enzymes |Lambda integrase-like, catalytic core |Integrase |Bacteriophage HP1 [TaxId: 10690]
d1n4pb_ : (LYS144) (ASN186) [view usage] : a.102.4.3 |alpha/alpha toroid |Terpenoid cyclases/Protein prenyltransferases |Protein prenyltransferases |Protein farnesyltransferase, beta-subunit |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1idua_ : (PHE412) (GLY494) [view usage] : a.111.1.3 |Acid phosphatase/Vanadium-dependent haloperoxidase |Acid phosphatase/Vanadium-dependent haloperoxidase |Chloroperoxidase |Chloroperoxidase |Curvularia inaequalis [TaxId: 38902]
d2d30a1 : (GLY87) (LEU121) [view usage] : c.97.1.1 |Cytidine deaminase-like |Cytidine deaminase-like |Cytidine deaminase |mono-domain cytidine deaminase |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
d3ue6d_ : (TYR206) (GLY243) [view usage] : d.110.3.0 |Profilin-like |PYP-like sensor domain (PAS domain) |automated matches |automated matches |Vaucheria frigida [TaxId: 195983]
d1fxka_ : (VAL7) (MSE110) [view usage] : a.2.5.1 |Long alpha-hairpin |Prefoldin |Prefoldin |Prefoldin beta subunit |Methanobacterium thermoautotrophicum [TaxId: 145262]
d1fxkb_ : (VAL7) (GLY112) [view usage] : a.2.5.1 |Long alpha-hairpin |Prefoldin |Prefoldin |Prefoldin beta subunit |Methanobacterium thermoautotrophicum [TaxId: 145262]
d1x0ha1 : (TYR68) (TYR104) [view usage] : d.332.1.1 |RGC domain-like |RGC domain-like |RGC domain |Ras GTPase-activating-like protein IQGAP1 |Human (Homo sapiens) [TaxId: 9606]
d2ahfa_ : (PRO167) (LEU237) [view usage] : a.102.1.7 |alpha/alpha toroid |Six-hairpin glycosidases |Glycosyl Hydrolase Family 88 |automated matches |Bacillus sp. [TaxId: 84635]
d3iezb_ : (ILE1537) (ASN1569) [view usage] : d.332.1.1 |RGC domain-like |RGC domain-like |RGC domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4gtob_ : (ARG174) (ASN215) [view usage] : a.102.4.3 |alpha/alpha toroid |Terpenoid cyclases/Protein prenyltransferases |Protein prenyltransferases |Protein farnesyltransferase, beta-subunit |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3ng0a1 : (THR4) (ASP42) [view usage] : d.15.9.0 |beta-Grasp (ubiquitin-like) |Glutamine synthetase, N-terminal domain |automated matches |automated matches |Synechocystis sp. [TaxId: 1148]
d2ouxa2 : (THR154) (ASN196) [view usage] : d.37.1.1 |CBS-domain pair |CBS-domain pair |CBS-domain pair |Magnesium transporter MgtE |Enterococcus faecalis [TaxId: 1351]
d1ulta_ : (TRP21) (GLY68) [view usage] : e.23.1.1 |Acetyl-CoA synthetase-like |Acetyl-CoA synthetase-like |Acetyl-CoA synthetase-like |Long chain fatty acid-CoA ligase TT0168 |Thermus thermophilus [TaxId: 274]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.10, a.102, e.23, a.123, c.97, d.110, d.37, d.145, c.38, d.15, a.111, a.2, d.332, a.213, d.163