Tableau information
Concept source: d1wu5a_ amino acid (a.a.) range (GLU25)(ASP83)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HEEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLU25) (GLY41) H1
(ILE48) (GLY53) E2
(ASP55) (LEU59) E3
(ARG68) (ASP83) H4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 -59.2° E2
E3 103.8° 162.9° E3
H4 -138.7° -80.7° 115.7°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±12.4° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2ps1a_ : (GLU5) (ASP64) [view usage] : c.61.1.0 |PRTase-like |PRTase-like |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4odxx_ : (VAL46) (ARG82) [view usage] : d.112.1.1 |Phoshotransferase/anion transport protein |Phoshotransferase/anion transport protein |IIA domain of mannitol-specific and ntr phosphotransferase EII |automated matches |Artificial gene [TaxId: 32630]
d1sera2 : (GLY203) (SER235) [view usage] : d.104.1.1 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain |Seryl-tRNA synthetase (SerRS) |Thermus thermophilus, strain hb27 [TaxId: 274]
d4pfta_ : (TYR123) (THR160) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Oligo-peptide binding protein (OPPA) |Thermotoga maritima [TaxId: 2336]
d3cu7ae : (HIS1202) (LYS1262) [view usage] : a.102.4.4 |alpha/alpha toroid |Terpenoid cyclases/Protein prenyltransferases |Complement components |Thio-ester containing domain (TED) from Complement C5 |Human (Homo sapiens) [TaxId: 9606]
d4m85a_ : (PHE53) (LEU88) [view usage] : d.108.1.0 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |automated matches |automated matches |Staphylococcus aureus [TaxId: 158878]
d1dgra_ : (SER53) (THR77) [view usage] : b.82.1.2 |Double-stranded beta-helix |RmlC-like cupins |Germin/Seed storage 7S protein |Seed storage 7S protein |Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]
d1ruoa1 : (ASP138) (VAL176) [view usage] : a.4.5.4 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |CAP C-terminal domain-like |Catabolite gene activator protein (CAP), C-terminal domain |Escherichia coli [TaxId: 562]
d1zlqa1 : (GLU102) (LEU135) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Nickel-binding periplasmic protein NikA |Escherichia coli [TaxId: 562]
d4odxy_ : (PHE49) (ARG82) [view usage] : d.112.1.1 |Phoshotransferase/anion transport protein |Phoshotransferase/anion transport protein |IIA domain of mannitol-specific and ntr phosphotransferase EII |automated matches |Artificial gene [TaxId: 32630]
d1hw5a1 : (ASP138) (VAL176) [view usage] : a.4.5.4 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |CAP C-terminal domain-like |Catabolite gene activator protein (CAP), C-terminal domain |Escherichia coli [TaxId: 562]
d1xiza_ : (PHE41) (ARG74) [view usage] : d.112.1.1 |Phoshotransferase/anion transport protein |Phoshotransferase/anion transport protein |IIA domain of mannitol-specific and ntr phosphotransferase EII |Putative PTS protein STM3784 |Salmonella typhimurium [TaxId: 90371]
d4pftb_ : (TYR123) (THR160) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Oligo-peptide binding protein (OPPA) |Thermotoga maritima [TaxId: 2336]
d1gg4a1 : (VAL313) (MSE350) [view usage] : c.59.1.1 |MurD-like peptide ligases, peptide-binding domain |MurD-like peptide ligases, peptide-binding domain |MurCDEF C-terminal domain |UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF |Escherichia coli [TaxId: 562]
d3qima_ : (GLU102) (LEU135) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Nickel-binding periplasmic protein NikA |Escherichia coli [TaxId: 562]
d1dpea_ : (GLY119) (ALA151) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Dipeptide-binding protein |Escherichia coli [TaxId: 562]
d3e3kb_ : (GLU102) (LEU135) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Nickel-binding periplasmic protein NikA |Escherichia coli [TaxId: 562]
d1kenh1 : (PRO62) (SER93) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Immunoglobulin heavy chain variable domain, VH |Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]
d4lrlc_ : (LEU204) (VAL240) [view usage] : a.211.1.1 |HD-domain/PDEase-like |HD-domain/PDEase-like |HD domain |Hypothetical protein EF1143 |Enterococcus faecalis [TaxId: 1351]
d1uiva_ : (GLU102) (LEU135) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Nickel-binding periplasmic protein NikA |Escherichia coli [TaxId: 562]
d1gh7a1 : (THR3) (LEU32) [view usage] : b.1.2.1 |Immunoglobulin-like beta-sandwich |Fibronectin type III |Fibronectin type III |Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors |Human (Homo sapiens) [TaxId: 9606]
d4hpga_ : (SER191) (ALA229) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |automated matches |Rubber tree (Hevea brasiliensis) [TaxId: 3981]
d4m85c_ : (PHE53) (LEU88) [view usage] : d.108.1.0 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |automated matches |automated matches |Staphylococcus aureus [TaxId: 158878]
d1ep5b_ : (ASP160) (THR188) [view usage] : b.47.1.3 |Trypsin-like serine proteases |Trypsin-like serine proteases |Viral proteases |Viral capsid protein |Venezuelan equine encephalitis virus [TaxId: 11036]
d4m85b_ : (PHE53) (LEU88) [view usage] : d.108.1.0 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |automated matches |automated matches |Staphylococcus aureus [TaxId: 158878]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, b.82, c.94, b.47, a.102, a.211, d.104, b.1, d.108, c.61, c.59, a.4, d.112