Protein Concepts Dictionary

Tableau information

Concept source:  d1unnc_  amino acid (a.a.) range (TRP256)(ARG324)

nSSEs in this Concept: 4

String of secondary struct.elems. (SSEs) defining this concept: HEEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (TRP256)  (LYS278) H1
	  (ALA284)  (PHE292) E2
	  (GLN297)  (VAL303) E3
	  (LYS309)  (ARG324) H4

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                          
E2      139.1°   E2                   
E3      -55.3°  165.1°   E3            
H4      135.9°  -37.6°  139.5°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±11.4°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d4lnfa1 :     (THR5)   (ASN48)   [view usage] : d.15.9.0 |beta-Grasp (ubiquitin-like) |Glutamine synthetase, N-terminal domain |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
 d1fuga3 :   (ARG272)  (PHE332)   [view usage] : d.130.1.1 |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |Escherichia coli [TaxId: 562]
 d1mo1b_ :    (ALA16)   (SER52)   [view usage] : d.94.1.1 |HPr-like |HPr-like |HPr-like |Crh, catabolite repression HPr-like protein |Bacillus subtilis [TaxId: 1423]
 d3gara_ :   (HIS119)  (GLY187)   [view usage] : c.65.1.1 |Formyltransferase |Formyltransferase |Formyltransferase |Glycinamide ribonucleotide transformylase, GART |Escherichia coli [TaxId: 562]
 d2a2lb_ :    (GLY77)  (LEU145)   [view usage] : d.110.9.1 |Profilin-like |GlcG-like |GlcG-like |DhaI homolog |Klebsiella pneumoniae [TaxId: 573]
 d3h1ha2 :   (SER292)  (CYS346)   [view usage] : d.185.1.0 |LuxS/MPP-like metallohydrolase |LuxS/MPP-like metallohydrolase |automated matches |automated matches |Chicken (Gallus gallus) [TaxId: 9031]
 d1bcca2 :   (LEU294)  (THR347)   [view usage] : d.185.1.1 |LuxS/MPP-like metallohydrolase |LuxS/MPP-like metallohydrolase |MPP-like |Cytochrome bc1 core subunit 1 |Chicken (Gallus gallus) [TaxId: 9031]
 d2rlza1 :    (ALA16)   (SER52)   [view usage] : d.94.1.1 |HPr-like |HPr-like |HPr-like |Crh, catabolite repression HPr-like protein |Bacillus subtilis [TaxId: 1423]
 d1pd5l_ :    (PHE55)  (GLY128)   [view usage] : c.43.1.1 |CoA-dependent acyltransferases |CoA-dependent acyltransferases |CAT-like |Chloramphenicol acetyltransferase, CAT |Escherichia coli [TaxId: 562]
 d1mdba_ :   (ALA312)  (VAL350)   [view usage] : e.23.1.1 |Acetyl-CoA synthetase-like |Acetyl-CoA synthetase-like |Acetyl-CoA synthetase-like |Dihydroxybenzoate-AMP ligase DhbE |Bacillus subtilis [TaxId: 1423]
 d2idba2 :   (ASP327)  (SER387)   [view usage] : d.333.1.1 |UbiD C-terminal domain-like |UbiD C-terminal domain-like |UbiD C-terminal domain-like |3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiD |Escherichia coli [TaxId: 562]
 d1s28a_ :    (ALA68)  (THR128)   [view usage] : d.198.1.1 |Secretion chaperone-like |Type III secretory system chaperone-like |Type III secretory system chaperone |AvrPphF ORF1, chaperone of AvrPphF ORF2 |Pseudomonas syringae pv. phaseolicola [TaxId: 319]
 d1x8da1 :    (TRP26)   (THR70)   [view usage] : d.58.4.21 |Ferredoxin-like |Dimeric alpha+beta barrel |YiiL-like |L-rhamnose mutarotase YiiL |Escherichia coli [TaxId: 562]
 d2a2lc_ :    (GLY77)  (LEU145)   [view usage] : d.110.9.1 |Profilin-like |GlcG-like |GlcG-like |DhaI homolog |Klebsiella pneumoniae [TaxId: 573]
 d2gvka1 :   (ALA230)  (MSE279)   [view usage] : d.58.4.14 |Ferredoxin-like |Dimeric alpha+beta barrel |Dyp-type peroxidase-like |Hypothetical protein BT1219 |Bacteroides thetaiotaomicron [TaxId: 818]
 d4jgna_ :    (THR57)  (LEU125)   [view usage] : d.255.1.1 |Tombusvirus P19 core protein, VP19 |Tombusvirus P19 core protein, VP19 |Tombusvirus P19 core protein, VP19 |automated matches |TBSV (Tomato bushy stunt virus) [TaxId: 12145]
 d1lr0a_ :     (ALA3)   (ASN90)   [view usage] : d.212.1.1 |TolA/TonB C-terminal domain |TolA/TonB C-terminal domain |TolA |TolA |Pseudomonas aeruginosa [TaxId: 287]
 d3av3a_ :   (ASP120)  (GLY187)   [view usage] : c.65.1.0 |Formyltransferase |Formyltransferase |automated matches |automated matches |Geobacillus kaustophilus [TaxId: 235909]
 d1zlxa_ :   (ASN119)  (ILE176)   [view usage] : c.65.1.1 |Formyltransferase |Formyltransferase |Formyltransferase |Glycinamide ribonucleotide transformylase, GART |Human (Homo sapiens) [TaxId: 9606]
 d1htta1 :   (GLY388)  (LEU422)   [view usage] : c.51.1.1 |Anticodon-binding domain-like |Class II aaRS ABD-related |Anticodon-binding domain of Class II aaRS |Histidyl-tRNA synthetase (HisRS), C-terminal domain |Escherichia coli [TaxId: 562]
 d2qn6b_ :   (ASN206)  (GLU257)   [view usage] : d.58.51.1 |Ferredoxin-like |eIF-2-alpha, C-terminal domain |eIF-2-alpha, C-terminal domain |eIF-2-alpha, C-terminal domain |Sulfolobus solfataricus [TaxId: 2287]
 d1pd5a_ :    (TYR56)  (ALA125)   [view usage] : c.43.1.1 |CoA-dependent acyltransferases |CoA-dependent acyltransferases |CAT-like |Chloramphenicol acetyltransferase, CAT |Escherichia coli [TaxId: 562]
 d2h4ua1 :    (ASN20)   (CYS74)   [view usage] : d.38.1.5 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |PaaI/YdiI-like |Hypothetical protein Them2 |Human (Homo sapiens) [TaxId: 9606]
 d4lijc_ :   (ARG124)  (VAL167)   [view usage] : d.51.1.1 |Eukaryotic type KH-domain (KH-domain type I) |Eukaryotic type KH-domain (KH-domain type I) |Eukaryotic type KH-domain (KH-domain type I) |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1meja_ :   (ALA120)  (GLY187)   [view usage] : c.65.1.1 |Formyltransferase |Formyltransferase |Formyltransferase |Glycinamide ribonucleotide transformylase, GART |Human (Homo sapiens) [TaxId: 9606]
 d3u9fa_ :    (PRO57)  (GLY128)   [view usage] : c.43.1.1 |CoA-dependent acyltransferases |CoA-dependent acyltransferases |CAT-like |Chloramphenicol acetyltransferase, CAT |Escherichia coli [TaxId: 562]
 d1mo1a_ :    (ALA16)   (SER52)   [view usage] : d.94.1.1 |HPr-like |HPr-like |HPr-like |Crh, catabolite repression HPr-like protein |Bacillus subtilis [TaxId: 1423]
 d4lnfj1 :     (THR5)   (ASP47)   [view usage] : d.15.9.0 |beta-Grasp (ubiquitin-like) |Glutamine synthetase, N-terminal domain |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
 d1o4sb_ :   (LEU332)  (SER376)   [view usage] : c.67.1.1 |PLP-dependent transferase-like |PLP-dependent transferases |AAT-like |Aspartate aminotransferase, AAT |Thermotoga maritima [TaxId: 2336]
 d1md9a_ :   (ALA312)  (VAL350)   [view usage] : e.23.1.1 |Acetyl-CoA synthetase-like |Acetyl-CoA synthetase-like |Acetyl-CoA synthetase-like |Dihydroxybenzoate-AMP ligase DhbE |Bacillus subtilis [TaxId: 1423]
 d4lijb_ :   (GLY119)  (VAL167)   [view usage] : d.51.1.1 |Eukaryotic type KH-domain (KH-domain type I) |Eukaryotic type KH-domain (KH-domain type I) |Eukaryotic type KH-domain (KH-domain type I) |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1mu4a_ :    (ARG17)   (SER52)   [view usage] : d.94.1.1 |HPr-like |HPr-like |HPr-like |Crh, catabolite repression HPr-like protein |Bacillus subtilis [TaxId: 1423]
 d1s62a_ :    (GLY13)   (ALA77)   [view usage] : d.212.1.1 |TolA/TonB C-terminal domain |TolA/TonB C-terminal domain |TolA |TolA |Escherichia coli [TaxId: 562]
 d1bxra6 :   (ILE698)  (TYR737)   [view usage] : d.142.1.2 |ATP-grasp |Glutathione synthetase ATP-binding domain-like |BC ATP-binding domain-like |Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains |Escherichia coli [TaxId: 562]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.67,    d.58,   d.185,    e.23,   d.110,    c.43,    d.38,    c.51,   d.142,    c.65,    d.15,   d.130,   d.240,    d.94,    d.51,   d.198,   d.333,   d.255,   d.212