Tableau information
Concept source: d1r56c2 amino acid (a.a.) range (VAL227)(LEU297)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(VAL227) (ARG241) H1
(THR247) (SER263) E2
(VAL277) (ASP283) E3
(GLY286) (LEU297) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 150.2° E2
E3 -71.7° 133.7° E3
E4 -40.7° 144.1° -75.9°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±11.1° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1r4sa2 : (SER226) (THR291) [view usage] : d.96.1.4 |T-fold |Tetrahydrobiopterin biosynthesis enzymes-like |Urate oxidase (uricase) |Urate oxidase (uricase) |Aspergillus flavus [TaxId: 5059]
d1vw4e_ : (LEU155) (GLY199) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, mitochondrial (54S or 39S subunit) |Saccharomyces cerevisiae [TaxId: 4932]
d1r56c2 : (VAL227) (LEU297) [view usage] : d.96.1.4 |T-fold |Tetrahydrobiopterin biosynthesis enzymes-like |Urate oxidase (uricase) |Urate oxidase (uricase) |Aspergillus flavus [TaxId: 5059]
d2jjtb_ : (THR82) (ALA115) [view usage] : b.1.1.0 |Immunoglobulin-like beta-sandwich |Immunoglobulin |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1r4ua2 : (SER226) (THR291) [view usage] : d.96.1.4 |T-fold |Tetrahydrobiopterin biosynthesis enzymes-like |Urate oxidase (uricase) |Urate oxidase (uricase) |Aspergillus flavus [TaxId: 5059]
d2nqva1 : (SER375) (ASN405) [view usage] : b.85.6.1 |beta-clip |MoeA C-terminal domain-like |MoeA C-terminal domain-like |Molybdenum cofactor biosynthesis protein MoeA, C-terminal domain |Escherichia coli [TaxId: 562]
d2dl2a1 : (MET70) (ILE101) [view usage] : b.1.1.4 |Immunoglobulin-like beta-sandwich |Immunoglobulin |I set domains |Killer cell inhibitory receptor |Human (Homo sapiens), 2dl2 [TaxId: 9606]
d1j2ga2 : (SER248) (GLN310) [view usage] : d.96.1.4 |T-fold |Tetrahydrobiopterin biosynthesis enzymes-like |Urate oxidase (uricase) |Urate oxidase (uricase) |Bacillus sp., strain TB-90 [TaxId: 1409]
d3pcoc2 : (GLN169) (ASP215) [view usage] : d.104.1.0 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |automated matches |automated matches |Escherichia coli [TaxId: 562]
d1fyba2 : (LYS56) (PRO109) [view usage] : g.69.1.1 |Plant proteinase inhibitors |Plant proteinase inhibitors |Plant proteinase inhibitors |Multidomain proteinase inhibitor |Winged tobacco (Nicotiana alata) [TaxId: 4087]
d2fuba1 : (PRO76) (GLU136) [view usage] : d.96.1.4 |T-fold |Tetrahydrobiopterin biosynthesis enzymes-like |Urate oxidase (uricase) |Urate oxidase (uricase) |Aspergillus flavus [TaxId: 5059]
d2g8ya_ : (GLY125) (LYS172) [view usage] : c.122.1.0 |L-sulfolactate dehydrogenase-like |L-sulfolactate dehydrogenase-like |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d2rcja1 : (ARG87) (VAL116) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |T-cell antigen receptor |Human (Homo sapiens), beta-chain [TaxId: 9606]
d1j2ga1 : (THR91) (GLU158) [view usage] : d.96.1.4 |T-fold |Tetrahydrobiopterin biosynthesis enzymes-like |Urate oxidase (uricase) |Urate oxidase (uricase) |Bacillus sp., strain TB-90 [TaxId: 1409]
d1usyd_ : (PHE54) (VAL98) [view usage] : d.104.1.1 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain |ATP phosphoribosyltransferase regulatory subunit HisZ |Thermotoga maritima [TaxId: 2336]
d1usyc_ : (PHE54) (PRO99) [view usage] : d.104.1.1 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain |ATP phosphoribosyltransferase regulatory subunit HisZ |Thermotoga maritima [TaxId: 2336]
d2dv5a_ : (ALA178) (VAL238) [view usage] : c.90.1.1 |Tetrapyrrole methylase |Tetrapyrrole methylase |Tetrapyrrole methylase |Diphthine synthase, DphB |Pyrococcus horikoshii [TaxId: 53953]
d2cu3a1 : (LEU16) (ALA59) [view usage] : d.15.3.2 |beta-Grasp (ubiquitin-like) |MoaD/ThiS |ThiS |Uncharacterised protein TTHA0675 |Thermus thermophilus [TaxId: 274]
d1vlmb_ : (SER155) (THR205) [view usage] : c.66.1.41 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |UbiE/COQ5-like |Possible histamine N-methyltransferase TM1293 |Thermotoga maritima [TaxId: 2336]
d4aooa_ : (ASP82) (ALA121) [view usage] : b.85.4.0 |beta-clip |dUTPase-like |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
d1usya_ : (PHE54) (VAL98) [view usage] : d.104.1.1 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain |ATP phosphoribosyltransferase regulatory subunit HisZ |Thermotoga maritima [TaxId: 2336]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
i.1, c.90, c.66, d.104, d.96, b.85, b.1, c.122, d.15, g.69