Tableau information
Concept source: d2cqda1 amino acid (a.a.) range (ALA25)(ASP61)
nSSEs in this Concept: 4
String of secondary struct.elems. (SSEs) defining this concept: HEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ALA25) (GLY35) H1
(GLY35) (GLU39) E2
(GLU39) (ILE43) E3
(GLY55) (ASP61) E4
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 140.9° E2
E3 141.5° 60.1° E3
E4 -24.7° 127.0° 165.7°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1avpa_ : (GLU5) (ASN61) [view usage] : d.3.1.7 |Cysteine proteinases |Cysteine proteinases |Adenain-like |Human adenovirus 2 proteinase, adenain |Mastadenovirus H2 [TaxId: 10515]
d2ynaa_ : (TYR54) (VAL94) [view usage] : b.47.1.0 |Trypsin-like serine proteases |Trypsin-like serine proteases |automated matches |automated matches |Tylonycteris bat coronavirus hku4 [TaxId: 694007]
d1nmwa_ : (GLN131) (ARG161) [view usage] : d.26.1.1 |FKBP-like |FKBP-like |FKBP immunophilin/proline isomerase |Mitotic rotamase PIN1, domain 2 |Human (Homo sapiens) [TaxId: 9606]
d1wfja_ : (LEU96) (SER131) [view usage] : b.7.1.2 |C2 domain-like |C2 domain (Calcium/lipid-binding domain, CaLB) |Synaptotagmin-like (S variant) |C2 domain protein At1g63220 |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d2mjua1 : (GLN353) (GLN381) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3by5a1 : (SER95) (THR128) [view usage] : c.151.1.1 |CobE/GbiG C-terminal domain-like |CobE/GbiG C-terminal domain-like |CobE/GbiG C-terminal domain-like |Cobalamin biosynthesis protein CobE |Agrobacterium tumefaciens [TaxId: 358]
d3lnua2 : (ASN261) (PRO301) [view usage] : d.14.1.0 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |automated matches |automated matches |Xanthomonas oryzae [TaxId: 291331]
d1vr4a1 : (LEU54) (THR99) [view usage] : d.230.5.1 |Dodecin subunit-like |YbjQ-like |YbjQ-like |Hypothetical protein BC1012 |Bacillus cereus [TaxId: 1396]
d1tina_ : (GLY17) (PRO64) [view usage] : d.40.1.1 |CI-2 family of serine protease inhibitors |CI-2 family of serine protease inhibitors |CI-2 family of serine protease inhibitors |Trypsin inhibitor V |Pumpkin (Cucurbita maxima) [TaxId: 3661]
d1zk6a_ : (ASP173) (LYS203) [view usage] : d.26.1.0 |FKBP-like |FKBP-like |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
d2ruca_ : (LYS86) (ARG115) [view usage] : d.26.1.1 |FKBP-like |FKBP-like |FKBP immunophilin/proline isomerase |Mitotic rotamase PIN1, domain 2 |Human (Homo sapiens) [TaxId: 9606]
d1j1ba_ : (ASN95) (ASP133) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |Glycogen synthase kinase-3 beta (Gsk3b) |Human (Homo sapiens) [TaxId: 9606]
d3laic_ : (TYR138) (LYS179) [view usage] : d.278.1.1 |Ligand-binding domain in the NO signalling and Golgi transport |Ligand-binding domain in the NO signalling and Golgi transport |H-NOX domain |Methyl-accepting chemotaxis protein |Thermoanaerobacter tengcongensis [TaxId: 119072]
d1omsc_ : (ALA60) (VAL115) [view usage] : d.241.2.1 |Ribosome binding domain-like |Trigger factor ribosome-binding domain |Trigger factor ribosome-binding domain |Trigger factor ribosome-binding domain |Escherichia coli [TaxId: 562]
d1sqfa2 : (LEU378) (ILE427) [view usage] : c.66.1.38 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |NOL1/NOP2/sun |Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain |Escherichia coli [TaxId: 562]
d4odja2 : (PRO156) (ARG207) [view usage] : d.130.1.0 |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |automated matches |automated matches |Cryptosporidium hominis [TaxId: 237895]
d1tw2a2 : (THR313) (PRO350) [view usage] : c.66.1.12 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Plant O-methyltransferase, C-terminal domain |Carminomycin 4-O-methyltransferase |Streptomyces peucetius [TaxId: 1950]
d1n5ha_ : (TYR34) (GLU82) [view usage] : d.17.1.3 |Cystatin-like |Cystatin/monellin |Cathelicidin motif |Cathelicidin motif of protegrin-3 |Pig (Sus scrofa) [TaxId: 9823]
d1ib8a2 : (ASP5) (PRO49) [view usage] : d.52.4.1 |Alpha-lytic protease prodomain-like |YhbC-like, N-terminal domain |YhbC-like, N-terminal domain |Hypothetical protein SP14.3 (SP0552) |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d1cisa_ : (SER31) (VAL84) [view usage] : k.1.1.1 |Hybrid and chimeric proteins |Hybrid and chimeric proteins |Hybrid and chimeric proteins |Hybrid protein between chymotrypsin inhibitor CI-2 and helix E from subtilisin Carlsberg |Barley (Hordeum vulgare), hiproly strain [TaxId: 4513]
d1tw2b2 : (THR313) (PRO350) [view usage] : c.66.1.12 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Plant O-methyltransferase, C-terminal domain |Carminomycin 4-O-methyltransferase |Streptomyces peucetius [TaxId: 1950]
d3laha_ : (MET137) (LYS179) [view usage] : d.278.1.1 |Ligand-binding domain in the NO signalling and Golgi transport |Ligand-binding domain in the NO signalling and Golgi transport |H-NOX domain |Methyl-accepting chemotaxis protein |Thermoanaerobacter tengcongensis [TaxId: 119072]
d1mita_ : (SER18) (PRO64) [view usage] : d.40.1.1 |CI-2 family of serine protease inhibitors |CI-2 family of serine protease inhibitors |CI-2 family of serine protease inhibitors |Trypsin inhibitor V |Pumpkin (Cucurbita maxima) [TaxId: 3661]
d1pwka_ : (ILE34) (PHE88) [view usage] : d.39.1.1 |DLC |DLC |DLC |Dynein light chain 1 (DLC1) |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2gtca_ : (GLY48) (GLY98) [view usage] : d.230.5.1 |Dodecin subunit-like |YbjQ-like |YbjQ-like |automated matches |Bacillus cereus [TaxId: 226900]
d4ktta2 : (LEU152) (ARG199) [view usage] : d.130.1.1 |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |Human (Homo sapiens), isoform type-2 [TaxId: 9606]
d2jzva_ : (ASP213) (ALA243) [view usage] : d.26.1.0 |FKBP-like |FKBP-like |automated matches |automated matches |Staphylococcus aureus [TaxId: 1280]
d1rzta3 : (PHE444) (GLY475) [view usage] : d.218.1.2 |Nucleotidyltransferase |Nucleotidyltransferase |DNA polymerase beta-like |DNA polymerase lambda |Human (Homo sapiens) [TaxId: 9606]
d1wf3a2 : (THR188) (GLU237) [view usage] : d.52.3.1 |Alpha-lytic protease prodomain-like |Prokaryotic type KH domain (KH-domain type II) |Prokaryotic type KH domain (KH-domain type II) |GTPase Era C-terminal domain |Thermus thermophilus [TaxId: 274]
d1brwa3 : (ALA351) (ASN400) [view usage] : d.41.3.1 |alpha/beta-Hammerhead |Pyrimidine nucleoside phosphorylase C-terminal domain |Pyrimidine nucleoside phosphorylase C-terminal domain |Pyrimidine nucleoside phosphorylase |Bacillus stearothermophilus [TaxId: 1422]
d1o90a2 : (PRO152) (ARG200) [view usage] : d.130.1.1 |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |S-adenosylmethionine synthetase |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1zyla1 : (THR63) (PRO107) [view usage] : d.144.1.6 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |APH phosphotransferases |RdoA |Escherichia coli [TaxId: 562]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
d.58, b.47, c.66, d.144, d.14, d.3, d.278, d.17, d.41, b.7, d.218, d.26, d.130, d.52, d.39, c.151, d.230, k.1, d.241, d.40